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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	718524	G-A	HOMO	INTERGENIC
SBS	Chr1	10837317	C-T	HET	INTERGENIC
SBS	Chr1	15195189	C-A	HET	INTRON
SBS	Chr1	19536118	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	32981318	T-C	HOMO	INTERGENIC
SBS	Chr1	33408685	G-T	HOMO	INTERGENIC
SBS	Chr2	21595622	C-A	HET	INTERGENIC
SBS	Chr2	25472977	A-G	HET	INTERGENIC
SBS	Chr2	27750667	A-G	HET	INTERGENIC
SBS	Chr2	30370446	C-T	HET	INTERGENIC
SBS	Chr3	17950884	A-T	HET	INTERGENIC
SBS	Chr4	15526245	G-A	HET	INTERGENIC
SBS	Chr4	16531840	C-T	HET	INTERGENIC
SBS	Chr4	34242041	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57550
SBS	Chr5	11233075	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr6	499964	C-T	HET	INTRON
SBS	Chr8	15996787	C-G	HET	INTERGENIC
SBS	Chr9	7759038	G-A	HOMO	INTERGENIC
SBS	Chr9	9061689	A-T	HET	INTERGENIC
SBS	Chr9	20341374	T-A	HET	INTERGENIC
SBS	Chr9	21188220	T-G	HET	INTERGENIC
SBS	Chr10	3574373	G-C	HET	INTERGENIC
SBS	Chr10	6194607	C-T	HET	INTERGENIC
SBS	Chr10	13619028	G-A	HET	INTERGENIC
SBS	Chr10	21054395	A-T	HET	INTERGENIC
SBS	Chr11	5138956	A-T	HOMO	STOP_GAINED	LOC_Os11g09610
SBS	Chr11	15044954	C-A	HOMO	INTERGENIC
SBS	Chr12	21426081	G-T	HOMO	INTERGENIC
SBS	Chr12	22272343	T-G	HOMO	STOP_GAINED	LOC_Os12g36380

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	659277	659294	17
Deletion	Chr11	2855070	2855083	13
Deletion	Chr4	4031555	4031557	2
Deletion	Chr1	4304915	4304916	1
Deletion	Chr7	5104661	5104666	5	LOC_Os07g09610
Deletion	Chr6	5728126	5728130	4
Deletion	Chr1	6396415	6396425	10	LOC_Os01g11830
Deletion	Chr5	6776726	6776732	6
Deletion	Chr4	7488443	7488446	3	LOC_Os04g13450
Deletion	Chr5	7599634	7599642	8	LOC_Os05g13720
Deletion	Chr2	7679806	7679807	1
Deletion	Chr3	7805970	7805971	1	LOC_Os03g14349
Deletion	Chr10	8688636	8688650	14
Deletion	Chr2	11311985	11311986	1
Deletion	Chr12	12213251	12213257	6	LOC_Os12g21720
Deletion	Chr12	12695873	12695892	19
Deletion	Chr7	13889001	14016000	127000	22
Deletion	Chr6	14825140	14825149	9
Deletion	Chr5	18979214	18979218	4
Deletion	Chr5	18979218	18979222	4
Deletion	Chr10	20264874	20264908	34
Deletion	Chr11	20465940	20465950	10
Deletion	Chr2	20647504	20647520	16
Deletion	Chr9	21178913	21178930	17
Deletion	Chr9	21347675	21347682	7	LOC_Os09g37012
Deletion	Chr8	22452168	22452170	2
Deletion	Chr8	22537092	22537111	19
Deletion	Chr12	23209988	23209996	8
Deletion	Chr5	25395997	25396005	8	LOC_Os05g43680
Deletion	Chr12	26157295	26157298	3
Deletion	Chr2	29211569	29212694	1125
Deletion	Chr2	29311572	29311573	1
Deletion	Chr4	30031736	30031740	4
Deletion	Chr2	31609640	31609641	1	LOC_Os02g51620
Deletion	Chr4	35433829	35433833	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	23605062	23605062	1
Insertion	Chr1	34064088	34064089	2
Insertion	Chr11	5387602	5387603	2
Insertion	Chr8	3392974	3392975	2
Insertion	Chr9	17787596	17787596	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	23471544	23861646	LOC_Os06g39520

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	20684291	Chr1	38624282

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