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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	11329347	C-T	HOMO	INTRON
SBS	Chr11	17674458	T-C	HET	INTRON
SBS	Chr11	7054253	G-T	HET	INTERGENIC
SBS	Chr11	725734	G-A	HET	INTRON
SBS	Chr11	7420893	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	8688934	C-G	HET	INTERGENIC
SBS	Chr12	12854157	T-G	HOMO	INTERGENIC
SBS	Chr12	15486966	G-C	HET	INTERGENIC
SBS	Chr2	15486459	C-A	HOMO	INTERGENIC
SBS	Chr2	19565336	G-A	HET	INTERGENIC
SBS	Chr2	24906512	C-T	HOMO	INTERGENIC
SBS	Chr2	31575422	C-T	HET	INTERGENIC
SBS	Chr3	23953658	G-A	HET	UTR_3_PRIME
SBS	Chr3	32059562	C-T	HET	INTERGENIC
SBS	Chr3	767187	G-A	HET	STOP_GAINED	LOC_Os03g02260
SBS	Chr4	23381738	G-A	HOMO	INTERGENIC
SBS	Chr5	11718283	G-C	HET	INTERGENIC
SBS	Chr5	22687426	A-T	HET	INTERGENIC
SBS	Chr5	37947	A-T	HOMO	INTERGENIC
SBS	Chr5	4553760	G-A	HOMO	INTRON
SBS	Chr5	7097216	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g12350
SBS	Chr6	1591033	C-T	HOMO	INTRON
SBS	Chr7	26959340	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g45160
SBS	Chr8	17324218	C-T	HET	INTERGENIC
SBS	Chr8	2381031	G-C	HET	INTERGENIC
SBS	Chr8	27055179	T-A	HET	UTR_3_PRIME

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	529043	529048	5
Deletion	Chr11	970106	970111	5	LOC_Os11g02860
Deletion	Chr3	2256266	2256271	5
Deletion	Chr5	3101363	3101369	6
Deletion	Chr2	3145001	3305000	160000	30
Deletion	Chr11	4167317	4167338	21
Deletion	Chr2	4755415	4755446	31
Deletion	Chr4	6313860	6313866	6
Deletion	Chr6	7529819	7529824	5
Deletion	Chr1	7599883	7599894	11
Deletion	Chr7	8423128	8423130	2
Deletion	Chr1	8874929	8874936	7
Deletion	Chr1	9527960	9559453	31493	3
Deletion	Chr6	11606805	11606811	6
Deletion	Chr10	11901947	11901956	9
Deletion	Chr11	13091414	13091415	1
Deletion	Chr2	14721446	14721447	1
Deletion	Chr4	16732597	16732598	1
Deletion	Chr8	17520413	17520416	3	LOC_Os08g28690
Deletion	Chr6	17888869	17888874	5
Deletion	Chr11	17970360	17970391	31	LOC_Os11g30880
Deletion	Chr8	18058031	18058043	12
Deletion	Chr11	18544100	18544112	12
Deletion	Chr10	19230623	19230625	2
Deletion	Chr9	19978297	19978303	6
Deletion	Chr10	21218102	21218122	20
Deletion	Chr9	21263545	21263549	4
Deletion	Chr7	21493140	21493148	8
Deletion	Chr1	21573911	21573928	17
Deletion	Chr11	23736936	23736948	12
Deletion	Chr6	25037729	25068913	31184	5
Deletion	Chr4	25784760	25784781	21	LOC_Os04g43570
Deletion	Chr5	25791363	25791378	15
Deletion	Chr8	26477132	26477135	3
Deletion	Chr6	26885301	26885303	2
Deletion	Chr5	27319161	27319168	7
Deletion	Chr1	39197105	39197112	7

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	32893855	32893855	1
Insertion	Chr12	25414125	25414126	2
Insertion	Chr4	14314974	14314975	2
Insertion	Chr6	26952515	26952515	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9473298	11896221	LOC_Os11g17080
Inversion	Chr1	29814891	34448235	LOC_Os01g59570

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11272929	Chr7	2280249	LOC_Os12g19381
Translocation	Chr12	13920481	Chr11	28172833	2
Translocation	Chr8	21330642	Chr1	24311716
Translocation	Chr11	22799305	Chr2	24817280	2

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