Search Results

Mutant Information

Mutant Name	FN498-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN498-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34225676	G-A	HOMO	INTERGENIC
SBS	Chr2	20261804	G-A	HET	INTERGENIC
SBS	Chr2	33933264	C-A	HET	STOP_GAINED	LOC_Os02g55400
SBS	Chr3	5137119	A-C	HET	UTR_3_PRIME
SBS	Chr3	5549609	A-G	HET	INTRON
SBS	Chr3	5703603	G-A	HET	INTERGENIC
SBS	Chr3	16553074	C-T	HET	INTRON
SBS	Chr3	21874009	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39350
SBS	Chr3	23533057	G-A	HET	INTERGENIC
SBS	Chr3	35621625	C-G	HET	INTERGENIC
SBS	Chr4	2163939	G-T	HET	INTERGENIC
SBS	Chr4	2211002	G-A	HOMO	INTERGENIC
SBS	Chr4	11909609	T-A	HET	INTERGENIC
SBS	Chr4	16412181	C-T	HOMO	INTERGENIC
SBS	Chr5	969156	T-A	HET	INTERGENIC
SBS	Chr5	1653688	C-A	HET	UTR_3_PRIME
SBS	Chr5	1653689	C-A	HET	UTR_3_PRIME
SBS	Chr5	5330377	C-T	HET	INTRON
SBS	Chr5	7024027	T-A	HET	INTERGENIC
SBS	Chr5	12600892	C-T	HET	INTERGENIC
SBS	Chr5	21579836	T-C	HOMO	INTERGENIC
SBS	Chr6	24946903	A-T	HET	INTERGENIC
SBS	Chr8	17040664	T-A	HOMO	INTERGENIC
SBS	Chr8	21172440	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33820
SBS	Chr8	21189433	A-T	HET	INTERGENIC
SBS	Chr8	27532639	G-A	HOMO	INTERGENIC
SBS	Chr8	27532640	T-A	HOMO	INTERGENIC
SBS	Chr9	7100340	A-G	HET	INTERGENIC
SBS	Chr9	11297343	C-T	HET	INTRON
SBS	Chr9	11658711	A-G	HOMO	INTERGENIC
SBS	Chr9	19960847	C-T	HET	INTERGENIC
SBS	Chr9	21599084	A-C	HET	INTERGENIC
SBS	Chr10	10235842	C-T	HOMO	INTERGENIC
SBS	Chr11	26653208	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g44150
SBS	Chr12	864428	T-C	HOMO	INTERGENIC
SBS	Chr12	13981833	C-T	HOMO	INTERGENIC
SBS	Chr12	27356434	C-T	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	452943	452976	33
Deletion	Chr9	1386896	1386900	4	LOC_Os09g02950
Deletion	Chr5	2652744	2652754	10	LOC_Os05g05370
Deletion	Chr9	2941882	2941905	23
Deletion	Chr12	3127579	3127586	7
Deletion	Chr11	4776908	4776916	8	LOC_Os11g08990
Deletion	Chr7	4856328	4856336	8
Deletion	Chr9	6463690	6463696	6	LOC_Os09g11580
Deletion	Chr5	6748191	6748198	7
Deletion	Chr4	7366793	7366838	45
Deletion	Chr3	9204298	9204302	4	LOC_Os03g16670
Deletion	Chr5	10114983	10114987	4	LOC_Os05g17604
Deletion	Chr6	12319527	12319543	16	LOC_Os06g21330
Deletion	Chr3	12384928	12384937	9
Deletion	Chr11	12908306	12908311	5
Deletion	Chr5	13799004	13799014	10
Deletion	Chr10	14517920	14517927	7
Deletion	Chr9	16956118	16956119	1
Deletion	Chr11	18451127	18451129	2
Deletion	Chr7	19914301	19914302	1	LOC_Os07g33310
Deletion	Chr3	23359598	23359616	18
Deletion	Chr4	23415240	23415250	10
Deletion	Chr2	23890971	23890975	4	LOC_Os02g39580
Deletion	Chr12	24779729	24779734	5
Deletion	Chr3	25094496	25094497	1
Deletion	Chr12	25362302	25362304	2
Deletion	Chr2	27933978	27933996	18	LOC_Os02g45850
Deletion	Chr4	28606198	28606203	5
Deletion	Chr1	35056141	35056156	15

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	5961847	5961850	4
Insertion	Chr11	25810310	25810321	12	LOC_Os11g42850
Insertion	Chr1	27140825	27140825	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3135052	3142373	2
Inversion	Chr2	10561150	11147879
Inversion	Chr2	10561172	11147910

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4071697	Chr9	18370226
Translocation	Chr6	4132594	Chr1	6087876
Translocation	Chr9	9018068	Chr8	21985174
Translocation	Chr10	11115534	Chr4	30456375
Translocation	Chr10	11826217	Chr3	7660262	LOC_Os10g22750
Translocation	Chr10	11827053	Chr3	7660223
Translocation	Chr11	20126935	Chr3	8265639	LOC_Os03g15130
Translocation	Chr5	20828150	Chr4	31852375

Main menu