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Mutant Information

Mutant Name	FN499-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN499-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31405588	A-T	HOMO	INTRON
SBS	Chr1	32718221	C-T	HOMO	INTERGENIC
SBS	Chr1	36589028	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g63150
SBS	Chr1	37789768	A-G	HOMO	INTERGENIC
SBS	Chr2	13309377	G-T	HOMO	INTERGENIC
SBS	Chr2	13309378	G-T	HOMO	INTERGENIC
SBS	Chr2	20212545	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	33092372	A-T	HOMO	INTRON
SBS	Chr3	581124	T-C	HET	INTERGENIC
SBS	Chr3	1014561	G-A	HET	INTERGENIC
SBS	Chr3	7127327	G-A	HET	INTERGENIC
SBS	Chr3	13770164	G-A	HET	INTERGENIC
SBS	Chr3	18798440	G-A	HOMO	INTERGENIC
SBS	Chr3	21827852	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39284
SBS	Chr3	25678678	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g45500
SBS	Chr4	6712162	C-T	HET	INTERGENIC
SBS	Chr4	12547853	C-T	HET	INTERGENIC
SBS	Chr4	22559031	C-T	HOMO	INTRON
SBS	Chr5	13650792	G-A	HET	INTERGENIC
SBS	Chr5	24201689	A-G	HOMO	INTERGENIC
SBS	Chr6	13315232	A-T	HET	UTR_3_PRIME
SBS	Chr6	24522433	C-T	HOMO	UTR_3_PRIME
SBS	Chr6	29877413	A-C	HOMO	INTRON
SBS	Chr7	11489776	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g19420
SBS	Chr7	14221243	G-T	HOMO	INTERGENIC
SBS	Chr7	14677755	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25600
SBS	Chr7	18088502	C-T	HOMO	INTERGENIC
SBS	Chr7	18088504	C-T	HOMO	INTERGENIC
SBS	Chr7	21808139	A-G	HOMO	INTERGENIC
SBS	Chr8	8396479	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14000
SBS	Chr8	8396480	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14000
SBS	Chr8	11097979	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18100
SBS	Chr9	4125878	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08010
SBS	Chr9	4149028	G-A	HOMO	INTERGENIC
SBS	Chr9	18045196	T-C	HET	INTRON
SBS	Chr9	22352886	C-T	HET	INTRON
SBS	Chr10	232458	G-A	HET	INTRON
SBS	Chr10	12729315	C-T	HOMO	INTERGENIC
SBS	Chr10	17639610	C-T	HOMO	INTERGENIC
SBS	Chr10	19273482	C-G	HOMO	INTERGENIC
SBS	Chr11	15644654	G-A	HOMO	INTRON
SBS	Chr12	9012103	C-T	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2258866	2258873	7
Deletion	Chr12	2836412	2836417	5	LOC_Os12g06080
Deletion	Chr2	5386328	5386338	10
Deletion	Chr12	6558243	6558251	8
Deletion	Chr7	13266444	13266448	4
Deletion	Chr2	13313190	13313195	5
Deletion	Chr12	14868300	14868304	4	LOC_Os12g25665
Deletion	Chr4	16211005	16211006	1	LOC_Os04g27420
Deletion	Chr1	16706655	16706673	18	LOC_Os01g29820
Deletion	Chr3	20949506	20949514	8
Deletion	Chr7	21808149	21808150	1
Deletion	Chr5	24202932	24202951	19
Deletion	Chr5	24958632	24958637	5
Deletion	Chr6	25258697	25258705	8
Deletion	Chr5	25558503	25558516	13	LOC_Os05g43920
Deletion	Chr8	27113579	27113591	12
Deletion	Chr11	27329765	27329766	1	LOC_Os11g45150
Deletion	Chr2	27670622	27670627	5	LOC_Os02g45490
Deletion	Chr3	29889732	29889755	23
Deletion	Chr2	30584679	30584684	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	13061771	13061772	2
Insertion	Chr11	1623145	1623146	2
Insertion	Chr11	28660277	28660278	2
Insertion	Chr6	3459409	3459409	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	34663594	35090864

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	18196670	Chr9	3015086	LOC_Os10g34090

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