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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10200643	A-G	HOMO	UTR_3_PRIME
SBS	Chr1	20605987	T-C	HET	INTERGENIC
SBS	Chr1	36024899	C-A	HET	INTERGENIC
SBS	Chr10	17565810	A-T	HOMO	UTR_5_PRIME
SBS	Chr10	18164096	G-A	HET	INTERGENIC
SBS	Chr10	3068228	C-G	HOMO	INTERGENIC
SBS	Chr11	28696874	T-C	HOMO	INTERGENIC
SBS	Chr11	8067610	G-A	HET	INTERGENIC
SBS	Chr11	8329289	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14790
SBS	Chr3	23974749	A-G	HOMO	INTERGENIC
SBS	Chr4	16533213	A-G	HOMO	INTRON
SBS	Chr4	1657653	G-A	HOMO	INTERGENIC
SBS	Chr4	31148580	C-T	HET	INTRON
SBS	Chr4	4931435	A-T	HOMO	INTERGENIC
SBS	Chr5	12797453	C-T	HET	INTERGENIC
SBS	Chr5	19058606	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr5	21635002	T-C	HET	INTRON
SBS	Chr5	26324331	T-A	HET	INTRON
SBS	Chr5	4474428	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	8226363	G-A	HET	INTERGENIC
SBS	Chr6	15626254	G-T	HOMO	INTERGENIC
SBS	Chr6	25243708	G-A	HET	INTERGENIC
SBS	Chr7	1306469	G-A	HET	INTRON
SBS	Chr7	4332511	T-C	HET	INTRON
SBS	Chr7	5893720	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g10840
SBS	Chr8	12532302	G-A	HET	INTERGENIC
SBS	Chr8	2110265	G-A	HOMO	INTRON
SBS	Chr8	26378130	C-T	HET	INTERGENIC
SBS	Chr9	20723919	G-T	HOMO	INTERGENIC
SBS	Chr9	22874562	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g39900
SBS	Chr9	22890150	T-C	HOMO	INTERGENIC
SBS	Chr9	5025545	G-T	HET	INTRON
SBS	Chr9	5025546	A-T	HET	INTRON
SBS	Chr9	8226667	G-A	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	550231	550232	1
Deletion	Chr2	2009044	2009047	3	LOC_Os02g04520
Deletion	Chr11	8059033	8059034	1	LOC_Os11g14350
Deletion	Chr1	13256764	13256766	2
Deletion	Chr4	14131663	14131666	3	2
Deletion	Chr7	17309938	17309939	1
Deletion	Chr5	17816448	17816454	6	LOC_Os05g30750
Deletion	Chr10	18154308	18155131	823	LOC_Os10g34030
Deletion	Chr10	18464856	18464859	3	LOC_Os10g34650
Deletion	Chr9	20421687	20421695	8
Deletion	Chr7	21604472	21604482	10
Deletion	Chr11	21647543	21647641	98
Deletion	Chr9	22897340	22897457	117	LOC_Os09g39920
Deletion	Chr3	27647108	27647110	2
Deletion	Chr1	31112614	31112624	10	LOC_Os01g54100
Deletion	Chr1	38721266	38721271	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20477927	20477928	2
Insertion	Chr2	18371365	18371366	2
Insertion	Chr3	23671316	23671319	4
Insertion	Chr3	6221716	6221717	2
Insertion	Chr4	17014022	17014023	2
Insertion	Chr6	31125907	31125907	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14916525	25799690	2
Inversion	Chr3	26980447	28567546	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	18154310	Chr8	22345241	LOC_Os10g34030
Translocation	Chr10	18155121	Chr8	22345229	LOC_Os10g34030

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