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Mutant Information

Mutant NameFN509-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN509-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 45
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr127598377G-THOMONON_SYNONYMOUS_CODINGLOC_Os01g48180
SBSChr131922713T-CHETINTERGENIC
SBSChr1012912980G-AHETNON_SYNONYMOUS_CODINGLOC_Os10g25080
SBSChr101349709C-THOMOINTERGENIC
SBSChr1112560644C-THOMOINTERGENIC
SBSChr1115161256C-GHOMOINTERGENIC
SBSChr11778173C-THOMOINTERGENIC
SBSChr1219580079A-THETINTRON
SBSChr25761468G-CHETINTRON
SBSChr29335635G-CHETINTERGENIC
SBSChr318711105G-THETINTERGENIC
SBSChr321010215G-AHOMOINTERGENIC
SBSChr322196267C-AHOMOINTERGENIC
SBSChr323707411G-AHOMOINTERGENIC
SBSChr330215260T-CHETINTERGENIC
SBSChr37038444C-THOMOINTERGENIC
SBSChr37038445C-THOMOINTERGENIC
SBSChr413051799T-AHETNON_SYNONYMOUS_CODINGLOC_Os04g22990
SBSChr413246538A-CHETINTERGENIC
SBSChr413279728A-THETINTRON
SBSChr414013054C-THETSTOP_GAINEDLOC_Os04g24430
SBSChr414329900C-AHETNON_SYNONYMOUS_CODINGLOC_Os04g24860
SBSChr42101959G-AHOMOINTERGENIC
SBSChr43192493G-AHETINTERGENIC
SBSChr512122345C-THOMOINTERGENIC
SBSChr516222311C-THETINTERGENIC
SBSChr522920966A-GHOMONON_SYNONYMOUS_CODINGLOC_Os05g39090
SBSChr611323855T-AHOMOINTERGENIC
SBSChr611718A-THETNON_SYNONYMOUS_CODINGLOC_Os06g01030
SBSChr61242679G-AHETINTERGENIC
SBSChr615295148C-THOMONON_SYNONYMOUS_CODINGLOC_Os06g26140
SBSChr621267118A-GHOMOINTERGENIC
SBSChr66959951C-THETINTERGENIC
SBSChr67046653G-THETINTERGENIC
SBSChr68495210C-THETNON_SYNONYMOUS_CODINGLOC_Os06g14980
SBSChr711598160T-AHETNON_SYNONYMOUS_CODINGLOC_Os07g19570
SBSChr714950484C-THETINTERGENIC
SBSChr723366294G-THOMOINTERGENIC
SBSChr818808807C-THOMOINTRON
SBSChr821661599G-THETINTERGENIC
SBSChr87997814G-THOMOINTERGENIC
SBSChr89191549C-THOMOINTERGENIC
SBSChr912286177G-AHETINTERGENIC
SBSChr912286179G-AHETINTERGENIC
SBSChr94936522G-THETINTRON

Deletions: 30
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr76634646634662
DeletionChr1123842312384241
DeletionChr61663588166361022
DeletionChr93460792346080210
DeletionChr54238001441700017900027
DeletionChr10694038169403843
DeletionChr7838885683888582
DeletionChr3900743990074456LOC_Os03g16320
DeletionChr7973100897310091LOC_Os07g16590
DeletionChr4104316091043162112
DeletionChr511526661115266709LOC_Os05g19750
DeletionChr1012101130121011388
DeletionChr1213870590139465277593712
DeletionChr413950250139502511LOC_Os04g24340
DeletionChr1014875277148780032726LOC_Os10g28580
DeletionChr1115102067151020736LOC_Os11g26380
DeletionChr8155043251550434520
DeletionChr715952991159529932
DeletionChr31608189916082404505
DeletionChr117347613173476141
DeletionChr117347618173476191
DeletionChr6208564392085645314
DeletionChr4209338662093391044
DeletionChr623663999236640001LOC_Os06g39840
DeletionChr11241074612410747312
DeletionChr224714010247140111LOC_Os02g40770
DeletionChr529117705291177072
DeletionChr13279400132854000600007
DeletionChr1331719513317196312
DeletionChr137978036379780459

Insertions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr142459782424597832
InsertionChr1020730853207308531LOC_Os10g38900image
InsertionChr1123843690238436901
InsertionChr235526121355261222
InsertionChr3194635219463521
InsertionChr44124944412500259LOC_Os04g07760image
InsertionChr6446467844646814
InsertionChr7752953975295424
InsertionChr8334790633479072
InsertionChr918262261182622611

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr41401423819000349
InversionChr41900033519191788LOC_Os04g32030

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr87565239Chr615609190LOC_Os06g27580
TranslocationChr912257861Chr13225642LOC_Os01g06790
TranslocationChr819838640Chr67023925
TranslocationChr526902687Chr316081925LOC_Os05g46430