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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19835487	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g35820
SBS	Chr1	37220271	G-T	HOMO	INTERGENIC
SBS	Chr1	41045097	G-A	HOMO	INTERGENIC
SBS	Chr1	41045098	T-A	HOMO	INTERGENIC
SBS	Chr2	10799072	C-G	HET	INTERGENIC
SBS	Chr2	23040515	T-C	HET	INTERGENIC
SBS	Chr2	34570884	G-A	HET	INTERGENIC
SBS	Chr3	6898053	A-G	HOMO	UTR_3_PRIME
SBS	Chr3	20598633	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g37180
SBS	Chr3	24973955	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	27564530	C-T	HET	INTERGENIC
SBS	Chr4	2562110	C-T	HOMO	INTRON
SBS	Chr5	7477545	T-C	HET	INTERGENIC
SBS	Chr6	17519860	G-A	HET	INTERGENIC
SBS	Chr6	20546556	G-A	HOMO	INTERGENIC
SBS	Chr7	15882759	C-A	HET	INTERGENIC
SBS	Chr8	21671913	G-C	HOMO	INTERGENIC
SBS	Chr9	22645323	G-T	HET	INTRON
SBS	Chr11	705116	C-A	HET	INTERGENIC
SBS	Chr12	2492560	A-G	HET	INTERGENIC
SBS	Chr12	12530356	T-G	HET	INTRON
SBS	Chr12	26313138	G-A	HOMO	INTRON

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	104274	104275	1
Deletion	Chr11	534759	534760	1	LOC_Os11g02000
Deletion	Chr8	1389645	1389655	10
Deletion	Chr6	1923390	1923416	26	LOC_Os06g04480
Deletion	Chr7	5741780	5741781	1
Deletion	Chr8	5845315	5845325	10
Deletion	Chr3	6822489	6822492	3
Deletion	Chr7	7034618	7034619	1
Deletion	Chr12	8483827	8483831	4
Deletion	Chr1	8578105	8578107	2
Deletion	Chr7	13273979	13273984	5	LOC_Os07g23485
Deletion	Chr3	13305340	13305346	6
Deletion	Chr12	14422829	14422830	1
Deletion	Chr6	15092324	15092328	4
Deletion	Chr7	15160241	15160242	1
Deletion	Chr6	17520806	17520835	29
Deletion	Chr10	19072193	19072198	5
Deletion	Chr3	19525213	19525214	1
Deletion	Chr6	19547994	19547998	4	LOC_Os06g33570
Deletion	Chr10	20683422	20683433	11	LOC_Os10g38850
Deletion	Chr11	21359831	21359838	7	LOC_Os11g36280
Deletion	Chr4	21491348	21507701	16353	2
Deletion	Chr5	22077839	22077847	8
Deletion	Chr6	22155024	22155029	5
Deletion	Chr3	23900001	24240000	340000	54
Deletion	Chr8	24551095	24551108	13
Deletion	Chr12	24974101	24974102	1
Deletion	Chr8	25528992	25529057	65
Deletion	Chr8	25529486	25529490	4
Deletion	Chr6	29443712	29443724	12	2
Deletion	Chr6	30883157	30883168	11
Deletion	Chr1	33043083	33043090	7
Deletion	Chr2	35709209	35709217	8	LOC_Os02g58390

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23798371	23798372	2
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr3	1257473	1257474	2
Insertion	Chr7	18536161	18536161	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3715296	3978384
Inversion	Chr5	3715307	3978388

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5265487	Chr3	27165207	LOC_Os07g09900
Translocation	Chr12	15284221	Chr10	15776444
Translocation	Chr7	25789991	Chr2	19515455
Translocation	Chr7	25791759	Chr2	19514790	2
Translocation	Chr12	26312962	Chr1	3224674	2

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