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Mutant Information |
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Mutant Name | FN527-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN527-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 26
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 12098997 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g21600 |
SBS | Chr1 | 17296733 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 17296734 | C-A | HET | INTERGENIC | |
SBS | Chr1 | 35644418 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 35732720 | G-T | HET | UTR_5_PRIME | |
SBS | Chr1 | 4175352 | A-C | HOMO | UTR_3_PRIME | |
SBS | Chr10 | 18068185 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 18633148 | A-G | HET | INTERGENIC | |
SBS | Chr10 | 21980787 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr11 | 20280413 | A-C | HOMO | INTRON | |
SBS | Chr2 | 3616376 | A-G | HET | SYNONYMOUS_CODING | |
SBS | Chr3 | 29008942 | G-C | HET | INTERGENIC | |
SBS | Chr3 | 6755152 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g12670 |
SBS | Chr4 | 35014994 | G-C | HET | INTERGENIC | |
SBS | Chr6 | 14806429 | G-T | HET | SYNONYMOUS_CODING | |
SBS | Chr6 | 29157216 | G-A | HET | INTRON | |
SBS | Chr6 | 29438362 | G-A | HET | INTRON | |
SBS | Chr6 | 30084286 | T-C | HET | INTERGENIC | |
SBS | Chr7 | 17052441 | A-G | HET | INTERGENIC | |
SBS | Chr7 | 3788853 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 11355202 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 13563587 | C-A | HET | INTERGENIC | |
SBS | Chr8 | 20352667 | A-G | HET | INTRON | |
SBS | Chr8 | 7181384 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 16466586 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g27060 |
SBS | Chr9 | 16512845 | G-T | HET | INTERGENIC |
Deletions: 26
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 1058965 | 1058972 | 7 | LOC_Os06g02880 |
Deletion | Chr5 | 2954093 | 2954099 | 6 | LOC_Os05g05880 |
Deletion | Chr7 | 3279299 | 3279300 | 1 | LOC_Os07g06720 |
Deletion | Chr4 | 3936280 | 3936286 | 6 | |
Deletion | Chr7 | 4565753 | 4565758 | 5 | |
Deletion | Chr3 | 5512342 | 5512368 | 26 | LOC_Os03g10780 |
Deletion | Chr5 | 6920947 | 6920948 | 1 | |
Deletion | Chr10 | 10990262 | 10990268 | 6 | |
Deletion | Chr12 | 11911618 | 11911628 | 10 | |
Deletion | Chr5 | 12405155 | 12405164 | 9 | LOC_Os05g21100 |
Deletion | Chr6 | 13158510 | 13158578 | 68 | |
Deletion | Chr10 | 13655269 | 13655270 | 1 | |
Deletion | Chr9 | 13955001 | 13982000 | 27000 | 4 |
Deletion | Chr4 | 13961306 | 13961327 | 21 | |
Deletion | Chr11 | 15197619 | 15197671 | 52 | LOC_Os11g26520 |
Deletion | Chr6 | 17227579 | 17227581 | 2 | |
Deletion | Chr9 | 17244941 | 17244959 | 18 | LOC_Os09g28380 |
Deletion | Chr9 | 17294001 | 17734000 | 440000 | 73 |
Deletion | Chr8 | 18896048 | 18896049 | 1 | |
Deletion | Chr10 | 19917525 | 19917530 | 5 | |
Deletion | Chr9 | 19992001 | 20006000 | 14000 | 3 |
Deletion | Chr2 | 21547214 | 21547215 | 1 | LOC_Os02g35860 |
Deletion | Chr3 | 23647680 | 23647689 | 9 | |
Deletion | Chr3 | 25283597 | 25283608 | 11 | |
Deletion | Chr6 | 25468189 | 25468213 | 24 | LOC_Os06g42370 |
Deletion | Chr1 | 39197105 | 39197112 | 7 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 3105927 | 3105928 | 2 | |
Insertion | Chr2 | 20954774 | 20954774 | 1 | |
Insertion | Chr6 | 23543748 | 23543750 | 3 | |
Insertion | Chr6 | 8418697 | 8418698 | 2 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 17292596 | 17293714 | |
Inversion | Chr9 | 17293304 | 17734215 | |
Inversion | Chr4 | 29366190 | 29430906 | |
Inversion | Chr4 | 29366201 | 29430906 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 17292502 | Chr1 | 3415554 | LOC_Os01g07240 |
Translocation | Chr9 | 17293290 | Chr1 | 3415552 | LOC_Os01g07240 |
Translocation | Chr11 | 20393380 | Chr7 | 18351882 | |
Translocation | Chr10 | 21401271 | Chr3 | 1339820 | |
Translocation | Chr10 | 21401272 | Chr3 | 1339821 | |
Translocation | Chr12 | 26891193 | Chr6 | 29363627 | LOC_Os06g48530 |
Translocation | Chr12 | 26892440 | Chr6 | 29363621 | LOC_Os06g48530 |