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Mutant Information

Mutant NameFN527-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN527-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 26
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr112098997C-THOMONON_SYNONYMOUS_CODINGLOC_Os01g21600
SBSChr117296733A-GHETINTERGENIC
SBSChr117296734C-AHETINTERGENIC
SBSChr135644418G-AHETINTERGENIC
SBSChr135732720G-THETUTR_5_PRIME
SBSChr14175352A-CHOMOUTR_3_PRIME
SBSChr1018068185T-AHETINTERGENIC
SBSChr1018633148A-GHETINTERGENIC
SBSChr1021980787G-AHETSYNONYMOUS_CODING
SBSChr1120280413A-CHOMOINTRON
SBSChr23616376A-GHETSYNONYMOUS_CODING
SBSChr329008942G-CHETINTERGENIC
SBSChr36755152G-THOMONON_SYNONYMOUS_CODINGLOC_Os03g12670
SBSChr435014994G-CHETINTERGENIC
SBSChr614806429G-THETSYNONYMOUS_CODING
SBSChr629157216G-AHETINTRON
SBSChr629438362G-AHETINTRON
SBSChr630084286T-CHETINTERGENIC
SBSChr717052441A-GHETINTERGENIC
SBSChr73788853C-THETINTERGENIC
SBSChr811355202G-AHETINTERGENIC
SBSChr813563587C-AHETINTERGENIC
SBSChr820352667A-GHETINTRON
SBSChr87181384G-AHETINTERGENIC
SBSChr916466586C-AHETNON_SYNONYMOUS_CODINGLOC_Os09g27060
SBSChr916512845G-THETINTERGENIC

Deletions: 26
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr6105896510589727LOC_Os06g02880
DeletionChr5295409329540996LOC_Os05g05880
DeletionChr7327929932793001LOC_Os07g06720
DeletionChr4393628039362866
DeletionChr7456575345657585
DeletionChr35512342551236826LOC_Os03g10780
DeletionChr5692094769209481
DeletionChr1010990262109902686
DeletionChr12119116181191162810
DeletionChr512405155124051649LOC_Os05g21100
DeletionChr6131585101315857868
DeletionChr1013655269136552701
DeletionChr91395500113982000270004
DeletionChr4139613061396132721
DeletionChr11151976191519767152LOC_Os11g26520
DeletionChr617227579172275812
DeletionChr9172449411724495918LOC_Os09g28380
DeletionChr9172940011773400044000073
DeletionChr818896048188960491
DeletionChr1019917525199175305
DeletionChr91999200120006000140003
DeletionChr221547214215472151LOC_Os02g35860
DeletionChr323647680236476899
DeletionChr3252835972528360811
DeletionChr6254681892546821324LOC_Os06g42370
DeletionChr139197105391971127

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr12310592731059282
InsertionChr220954774209547741
InsertionChr623543748235437503
InsertionChr6841869784186982

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr91729259617293714
InversionChr91729330417734215
InversionChr42936619029430906
InversionChr42936620129430906

Translocations: 7
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr917292502Chr13415554LOC_Os01g07240
TranslocationChr917293290Chr13415552LOC_Os01g07240
TranslocationChr1120393380Chr718351882
TranslocationChr1021401271Chr31339820
TranslocationChr1021401272Chr31339821
TranslocationChr1226891193Chr629363627LOC_Os06g48530
TranslocationChr1226892440Chr629363621LOC_Os06g48530