Search Results
| Mutant Information |
|---|
| Mutant Name | FN539-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN539-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 1913396 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 11929046 | G-A | HET | INTRON | |
| SBS | Chr5 | 1129427 | T-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 13752886 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 23962002 | C-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr6 | 9172724 | T-C | HET | INTRON | |
| SBS | Chr6 | 13780594 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 23060615 | C-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 1898280 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 24760359 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 24760360 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 18614683 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 19854037 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 17038778 | T-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 6474578 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 20880258 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 22477939 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 22477940 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 2879968 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 16527532 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 16527533 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 21716327 | C-T | HET | INTERGENIC |
Deletions: 25
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1975125 | 1975134 | 9 | |
| Deletion | Chr4 | 3131575 | 3131597 | 22 | |
| Deletion | Chr9 | 4178936 | 4178944 | 8 | |
| Deletion | Chr9 | 8564478 | 8564536 | 58 | |
| Deletion | Chr11 | 9734684 | 9734688 | 4 | |
| Deletion | Chr8 | 10964025 | 10964042 | 17 | |
| Deletion | Chr10 | 11449892 | 11449898 | 6 | |
| Deletion | Chr2 | 13844802 | 13844809 | 7 | |
| Deletion | Chr7 | 15723486 | 15723487 | 1 | |
| Deletion | Chr9 | 16237157 | 16237159 | 2 | |
| Deletion | Chr5 | 17501828 | 17501832 | 4 | |
| Deletion | Chr12 | 19378289 | 19378291 | 2 | |
| Deletion | Chr9 | 19508737 | 19508743 | 6 | |
| Deletion | Chr4 | 21053321 | 21053322 | 1 | |
| Deletion | Chr12 | 21610552 | 21610562 | 10 | |
| Deletion | Chr5 | 22032540 | 22032548 | 8 | |
| Deletion | Chr7 | 22317001 | 22367000 | 50000 | 10 |
| Deletion | Chr9 | 22790578 | 22790588 | 10 | |
| Deletion | Chr10 | 22828473 | 22828477 | 4 | |
| Deletion | Chr4 | 25954076 | 25954082 | 6 | |
| Deletion | Chr3 | 26719696 | 26719698 | 2 | |
| Deletion | Chr5 | 27297752 | 27297753 | 1 | |
| Deletion | Chr3 | 30806392 | 30806428 | 36 | LOC_Os03g53720 |
| Deletion | Chr2 | 31361390 | 31361480 | 90 | |
| Deletion | Chr1 | 37982606 | 37982611 | 5 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 25412077 | 25412078 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 4886363 | 5221610 | LOC_Os09g09130 |
| Inversion | Chr4 | 11770156 | 28892992 | 2 |
| Inversion | Chr4 | 11772300 | 28892959 | 2 |
| Inversion | Chr2 | 15096314 | 15616022 | 2 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 44204 | Chr8 | 26841573 | 2 |
| Translocation | Chr7 | 845939 | Chr2 | 1320217 | |
| Translocation | Chr7 | 846098 | Chr2 | 1320215 | |
| Translocation | Chr11 | 12580738 | Chr8 | 22301621 | |
| Translocation | Chr10 | 13371095 | Chr8 | 27373550 | |
| Translocation | Chr12 | 26811303 | Chr9 | 13285788 | |
| Translocation | Chr12 | 26825883 | Chr9 | 13285768 | LOC_Os12g43220 |
| Translocation | Chr11 | 27826722 | Chr6 | 25898116 |