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| Mutant Information |
|---|
| Mutant Name | FN540-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN540-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22518718 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 35610329 | A-T | HET | INTRON | |
| SBS | Chr10 | 3025522 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 3025525 | C-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 9009080 | C-T | HOMO | INTRON | |
| SBS | Chr11 | 17792706 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 7144247 | C-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 10167280 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 14970991 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 19358582 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g32090 |
| SBS | Chr12 | 19713529 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 21843701 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 2184946 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 23055316 | C-G | HET | INTRON | |
| SBS | Chr12 | 23601066 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 24584662 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 27684885 | G-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 7573579 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 17283786 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 22561798 | A-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 34499168 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 10620996 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 27980629 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 28742986 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 5652870 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr7 | 15980879 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g27420 |
| SBS | Chr8 | 1675233 | G-T | HET | UTR_5_PRIME | |
| SBS | Chr8 | 21061456 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 698939 | G-A | HET | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 1284803 | 1284812 | 9 | |
| Deletion | Chr3 | 2185095 | 2188569 | 3474 | |
| Deletion | Chr12 | 3136969 | 3136970 | 1 | |
| Deletion | Chr6 | 5724804 | 5724811 | 7 | LOC_Os06g10960 |
| Deletion | Chr8 | 5812799 | 5812802 | 3 | LOC_Os08g10030 |
| Deletion | Chr8 | 6718519 | 6718520 | 1 | |
| Deletion | Chr1 | 8309609 | 8309617 | 8 | |
| Deletion | Chr6 | 12197671 | 12197672 | 1 | LOC_Os06g21120 |
| Deletion | Chr7 | 15254393 | 15254400 | 7 | |
| Deletion | Chr12 | 19430001 | 20041000 | 611000 | 85 |
| Deletion | Chr6 | 19441425 | 19441430 | 5 | |
| Deletion | Chr9 | 20307243 | 20307266 | 23 | LOC_Os09g34847 |
| Deletion | Chr4 | 20459945 | 20459946 | 1 | |
| Deletion | Chr8 | 21220339 | 21220340 | 1 | |
| Deletion | Chr6 | 23849915 | 23849933 | 18 | |
| Deletion | Chr7 | 26011592 | 26015333 | 3741 | 2 |
| Deletion | Chr6 | 26149694 | 26149697 | 3 | |
| Deletion | Chr6 | 27278468 | 27278530 | 62 | LOC_Os06g45100 |
| Deletion | Chr3 | 31442847 | 31442850 | 3 | LOC_Os03g55240 |
Insertions: 6
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 1919998 | 19701706 | LOC_Os11g33310 |
| Inversion | Chr8 | 9879119 | 10026706 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2044485 | Chr4 | 12757392 | LOC_Os10g04342 |
| Translocation | Chr3 | 2185096 | Chr2 | 27390056 | |
| Translocation | Chr3 | 2188560 | Chr2 | 27390049 | |
| Translocation | Chr11 | 15401602 | Chr10 | 3537121 | |
| Translocation | Chr8 | 15765020 | Chr3 | 15248667 | 2 |
| Translocation | Chr4 | 16416715 | Chr1 | 32335247 | LOC_Os01g56150 |
| Translocation | Chr10 | 17125791 | Chr1 | 41858998 | |
| Translocation | Chr12 | 19818834 | Chr6 | 14832856 | 2 |