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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20194816	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36390
SBS	Chr1	22977865	A-T	HET	INTERGENIC
SBS	Chr1	23057760	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g40810
SBS	Chr1	34410174	A-G	HOMO	INTRON
SBS	Chr1	37725889	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64990
SBS	Chr10	10211551	G-A	HOMO	INTERGENIC
SBS	Chr10	3835638	T-C	HOMO	INTRON
SBS	Chr11	14727703	G-A	HOMO	INTRON
SBS	Chr11	1530614	G-A	HET	INTERGENIC
SBS	Chr11	1530615	G-A	HET	INTERGENIC
SBS	Chr11	24115647	C-T	HET	INTERGENIC
SBS	Chr2	11638945	T-G	HET	INTERGENIC
SBS	Chr2	15108711	A-T	HET	INTERGENIC
SBS	Chr2	1866270	C-T	HET	INTERGENIC
SBS	Chr3	10061057	C-A	HET	INTERGENIC
SBS	Chr3	27431507	C-T	HOMO	INTERGENIC
SBS	Chr3	3032084	T-A	HET	INTERGENIC
SBS	Chr3	30990054	C-A	HET	UTR_5_PRIME
SBS	Chr3	4031023	C-T	HET	INTERGENIC
SBS	Chr4	14097914	T-C	HET	INTERGENIC
SBS	Chr4	6478341	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g11820
SBS	Chr4	7247804	G-T	HET	INTERGENIC
SBS	Chr4	8338428	C-T	HET	INTERGENIC
SBS	Chr4	8683531	C-A	HET	INTERGENIC
SBS	Chr5	14050171	A-G	HOMO	INTERGENIC
SBS	Chr5	26204153	A-G	HOMO	INTERGENIC
SBS	Chr6	10178722	G-T	HET	INTERGENIC
SBS	Chr6	14434436	G-A	HET	INTERGENIC
SBS	Chr6	15054009	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25770
SBS	Chr6	19822057	A-C	HET	INTERGENIC
SBS	Chr6	23188725	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g39060
SBS	Chr8	14060406	C-A	HOMO	INTERGENIC
SBS	Chr8	15305729	A-G	HET	INTRON
SBS	Chr8	20920353	T-C	HET	INTERGENIC
SBS	Chr8	23797208	T-C	HET	INTERGENIC
SBS	Chr9	11293830	C-A	HOMO	INTERGENIC
SBS	Chr9	2126892	A-C	HOMO	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1748114	1748125	11
Deletion	Chr6	2086377	2086388	11
Deletion	Chr3	2766967	2766976	9
Deletion	Chr12	3064927	3064928	1
Deletion	Chr6	5985021	5985023	2
Deletion	Chr7	8017003	8023711	6708	3
Deletion	Chr9	11265774	11265793	19	LOC_Os09g18360
Deletion	Chr1	12644001	12780000	136000	22
Deletion	Chr9	13413001	13468000	55000	9
Deletion	Chr1	16015598	16020883	5285	LOC_Os01g28630
Deletion	Chr3	17806924	17806938	14
Deletion	Chr1	18140211	18140212	1
Deletion	Chr12	19262944	19362108	99164	12
Deletion	Chr8	20937001	21024000	87000	13
Deletion	Chr8	22820963	22820977	14
Deletion	Chr1	23203403	23203411	8
Deletion	Chr11	23480500	23480502	2
Deletion	Chr1	23670623	23675121	4498	LOC_Os01g41810
Deletion	Chr6	26562729	26562756	27
Deletion	Chr3	29666302	29666303	1
Deletion	Chr2	30713959	30713961	2
Deletion	Chr6	31031001	31121000	90000	12
Deletion	Chr1	40201222	40201236	14
Deletion	Chr1	41947131	41947133	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr3	10224923	10224924	2	LOC_Os03g18230
Insertion	Chr5	20720242	20720242	1
Insertion	Chr6	21171225	21171225	1	LOC_Os06g36170
Insertion	Chr6	6202864	6202865	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	19992228	21023893
Inversion	Chr8	20489729	20936931
Inversion	Chr6	20733539	25282498	LOC_Os06g42090
Inversion	Chr1	29814892	34448233	LOC_Os01g59570
Inversion	Chr6	30497346	31120902	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8958194	Chr1	23675098	LOC_Os01g41810
Translocation	Chr9	8958196	Chr1	23672195
Translocation	Chr2	11552943	Chr1	23672182	LOC_Os02g19750
Translocation	Chr2	11552950	Chr1	23670626	LOC_Os02g19750
Translocation	Chr6	16153380	Chr2	10936403	2
Translocation	Chr11	19638385	Chr4	23729597	LOC_Os04g39840
Translocation	Chr11	19638387	Chr4	23700637	LOC_Os04g39780
Translocation	Chr12	25499049	Chr1	41499146

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