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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20461861	G-A	HOMO	INTERGENIC
SBS	Chr1	37374336	C-T	HOMO	INTERGENIC
SBS	Chr1	5481309	T-A	HET	INTERGENIC
SBS	Chr10	106997	A-T	HET	INTERGENIC
SBS	Chr10	18197321	G-T	HET	SYNONYMOUS_CODING
SBS	Chr10	22945744	G-A	HET	INTERGENIC
SBS	Chr11	15959790	C-T	HET	INTRON
SBS	Chr12	18436529	T-C	HET	INTRON
SBS	Chr12	9139313	C-T	HET	INTRON
SBS	Chr2	11284662	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	3631895	T-A	HET	INTERGENIC
SBS	Chr3	19320467	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33810
SBS	Chr3	30199970	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	35500920	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g62730
SBS	Chr4	11914138	T-C	HOMO	INTRON
SBS	Chr4	12356631	A-G	HOMO	INTERGENIC
SBS	Chr4	23232086	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39090
SBS	Chr4	23314522	C-G	HET	INTERGENIC
SBS	Chr4	2695668	C-T	HOMO	INTERGENIC
SBS	Chr5	28462685	G-A	HET	INTERGENIC
SBS	Chr5	9595657	G-A	HOMO	INTERGENIC
SBS	Chr6	11796320	C-T	HET	INTERGENIC
SBS	Chr6	11831212	A-T	HET	INTERGENIC
SBS	Chr7	18163684	G-A	HET	INTERGENIC
SBS	Chr7	18705711	G-A	HOMO	INTERGENIC
SBS	Chr7	18862161	C-T	HOMO	INTERGENIC
SBS	Chr7	22749699	C-A	HET	INTRON
SBS	Chr7	635666	C-T	HOMO	INTERGENIC
SBS	Chr7	7786268	C-T	HOMO	INTERGENIC
SBS	Chr8	1138549	G-T	HOMO	INTRON
SBS	Chr8	14223520	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	18755438	C-A	HET	INTERGENIC
SBS	Chr8	3882735	C-T	HET	INTRON
SBS	Chr8	6620727	C-T	HET	INTRON
SBS	Chr9	12109537	G-C	HET	INTERGENIC
SBS	Chr9	13712369	T-C	HOMO	INTRON
SBS	Chr9	17403961	C-T	HET	INTERGENIC
SBS	Chr9	4057609	C-T	HET	INTERGENIC
SBS	Chr9	6039976	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	3018376	3018379	3
Deletion	Chr6	6873307	6873309	2
Deletion	Chr1	7487560	7487562	2
Deletion	Chr6	7638013	7638018	5
Deletion	Chr7	9658001	9865000	206999	34
Deletion	Chr5	13122219	13122258	39
Deletion	Chr1	16892612	16892613	1
Deletion	Chr7	20723948	20723952	4
Deletion	Chr11	20956254	20956255	1
Deletion	Chr1	40246726	40246727	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	24589600	24589601	2
Insertion	Chr7	9847261	9847261	1
Insertion	Chr9	225576	225578	3
Insertion	Chr9	5298719	5298719	1

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	8953433	Chr4	11550325
Translocation	Chr11	15714483	Chr8	18521709	LOC_Os11g27329
Translocation	Chr8	16361552	Chr7	8882904
Translocation	Chr11	28772598	Chr1	16059626

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