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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13515397	A-C	HET	INTERGENIC
SBS	Chr1	14371180	C-T	HET	STOP_GAINED	LOC_Os01g25402
SBS	Chr2	14697459	C-G	HET	INTERGENIC
SBS	Chr2	27959590	C-T	HET	INTERGENIC
SBS	Chr3	10539950	C-T	HOMO	INTERGENIC
SBS	Chr3	17334041	G-C	HET	INTERGENIC
SBS	Chr3	23795379	A-T	HET	INTERGENIC
SBS	Chr3	23909876	T-A	HET	INTRON
SBS	Chr3	23909877	T-A	HET	INTRON
SBS	Chr3	23909882	C-T	HET	INTRON
SBS	Chr4	6024008	G-C	HET	INTERGENIC
SBS	Chr4	6677370	T-C	HET	INTERGENIC
SBS	Chr4	9619718	G-T	HET	INTERGENIC
SBS	Chr5	9146993	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	28974835	A-T	HET	INTRON
SBS	Chr6	7778456	A-G	HET	INTRON
SBS	Chr7	11707017	C-T	HET	INTERGENIC
SBS	Chr7	16011360	C-T	HOMO	INTERGENIC
SBS	Chr7	20031428	T-C	HET	INTERGENIC
SBS	Chr7	29087848	G-T	HET	INTERGENIC
SBS	Chr8	12962956	A-G	HET	INTRON
SBS	Chr8	20764195	T-A	HOMO	INTERGENIC
SBS	Chr8	27676351	C-A	HOMO	UTR_3_PRIME
SBS	Chr9	2507736	A-G	HET	INTRON
SBS	Chr9	20463280	C-T	HOMO	INTERGENIC
SBS	Chr10	4407351	A-G	HET	INTERGENIC
SBS	Chr10	6116101	A-G	HET	INTERGENIC
SBS	Chr10	11852717	C-T	HOMO	INTERGENIC
SBS	Chr11	11292139	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19590
SBS	Chr11	15699376	T-A	HOMO	INTERGENIC
SBS	Chr12	3377769	T-C	HET	INTRON
SBS	Chr12	25298586	A-G	HET	INTRON

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1990921	1990923	2
Deletion	Chr12	3156629	3156634	5	LOC_Os12g06520
Deletion	Chr11	3749962	3749970	8
Deletion	Chr4	4045825	4045827	2
Deletion	Chr6	4765058	4765059	1
Deletion	Chr10	4799114	4799115	1
Deletion	Chr3	4850550	4850551	1
Deletion	Chr9	5338588	5338589	1
Deletion	Chr6	5833829	5833832	3
Deletion	Chr7	9371102	9371117	15	LOC_Os07g16070
Deletion	Chr2	9536001	9608000	72000	17
Deletion	Chr9	11852672	11852673	1
Deletion	Chr11	13055981	13056008	27
Deletion	Chr8	13472797	13472810	13
Deletion	Chr4	14863813	14863817	4	LOC_Os04g25650
Deletion	Chr2	16134161	16134163	2
Deletion	Chr7	17388919	17388921	2
Deletion	Chr4	19912659	19912688	29
Deletion	Chr3	21075681	21075682	1
Deletion	Chr3	22919550	22919557	7
Deletion	Chr7	25471758	25471769	11
Deletion	Chr3	26037790	26037805	15
Deletion	Chr2	27838367	27838371	4	LOC_Os02g45750
Deletion	Chr7	28207992	28208198	206
Deletion	Chr2	30405654	30421271	15617	2
Deletion	Chr2	31924975	31924996	21	LOC_Os02g52160
Deletion	Chr2	34651490	34651496	6	LOC_Os02g56565

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3098423	3098426	4	LOC_Os01g06580
Insertion	Chr1	30283151	30283151	1
Insertion	Chr11	7192664	7192666	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14765552	15513018	2
Inversion	Chr5	17318969	17338581	2
Inversion	Chr6	19946187	20018114

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	19957428	Chr7	26404006	LOC_Os07g44180
Translocation	Chr12	19957657	Chr7	26404005	LOC_Os07g44180
Translocation	Chr12	25582608	Chr5	17617519	LOC_Os05g30390

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