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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10388541	C-T	HET	INTERGENIC
SBS	Chr1	13754301	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24400
SBS	Chr1	18201074	T-A	HET	INTERGENIC
SBS	Chr1	25251061	C-T	HOMO	INTERGENIC
SBS	Chr10	20698640	C-T	HOMO	INTERGENIC
SBS	Chr10	3335015	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	1399635	G-C	HOMO	INTERGENIC
SBS	Chr12	22870414	G-A	HET	INTERGENIC
SBS	Chr12	22870415	C-A	HET	INTERGENIC
SBS	Chr2	32086780	T-C	HOMO	INTERGENIC
SBS	Chr2	717089	G-A	HET	INTERGENIC
SBS	Chr2	717100	T-A	HET	INTERGENIC
SBS	Chr2	717111	G-C	HET	INTERGENIC
SBS	Chr3	11224141	T-A	HET	INTERGENIC
SBS	Chr3	2739175	G-A	HOMO	INTERGENIC
SBS	Chr3	3641636	T-C	HOMO	INTRON
SBS	Chr3	4975265	C-G	HOMO	INTERGENIC
SBS	Chr3	9064162	C-T	HOMO	INTERGENIC
SBS	Chr4	27097765	T-C	HET	INTERGENIC
SBS	Chr4	32766994	C-T	HET	INTERGENIC
SBS	Chr5	21526077	C-A	HET	SYNONYMOUS_CODING
SBS	Chr7	14004292	G-A	HET	INTERGENIC
SBS	Chr7	4070881	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g08040
SBS	Chr7	5677114	C-T	HET	INTERGENIC
SBS	Chr7	7566255	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13190
SBS	Chr8	1725326	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	23421983	T-A	HET	INTERGENIC
SBS	Chr8	6044015	C-G	HET	INTRON
SBS	Chr9	19176353	T-A	HOMO	INTRON
SBS	Chr9	6024033	T-A	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1059969	1168329	108360	20
Deletion	Chr12	1070334	1070341	7	LOC_Os12g02910
Deletion	Chr8	2869639	2869647	8	LOC_Os08g05430
Deletion	Chr10	6700856	6700864	8
Deletion	Chr12	7630023	7630024	1
Deletion	Chr12	9074001	9104000	30000	5
Deletion	Chr12	9107001	9846000	739000	119
Deletion	Chr12	9857001	10157000	300000	50
Deletion	Chr2	10843061	10843067	6
Deletion	Chr8	11770642	11770660	18
Deletion	Chr2	14142985	14142990	5
Deletion	Chr4	17266159	17266164	5
Deletion	Chr6	19647295	19647329	34	LOC_Os06g33770
Deletion	Chr2	24115103	24115104	1
Deletion	Chr12	24394197	24394198	1
Deletion	Chr4	25460027	25460028	1
Deletion	Chr6	26843511	26843515	4	LOC_Os06g44450
Deletion	Chr5	26868096	26868097	1
Deletion	Chr1	33903729	33903730	1
Deletion	Chr1	42750295	42750297	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	8950121	8950122	2
Insertion	Chr6	23500335	23500336	2
Insertion	Chr8	15238874	15238875	2
Insertion	Chr9	21159465	21159466	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	13354983	Chr8	13624692	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	36136483	36140436	3953

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