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| Mutant Information |
|---|
| Mutant Name | FN628-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN628-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27452066 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g47970 |
| SBS | Chr1 | 40221326 | G-C | HOMO | INTRON | |
| SBS | Chr1 | 4210664 | A-G | HOMO | INTRON | |
| SBS | Chr1 | 6887778 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 7568839 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 16536709 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 21999716 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 16548552 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 18944975 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 5480418 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 9473506 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 10955230 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 7732330 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 9616705 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g17600 |
| SBS | Chr4 | 9617010 | T-G | HOMO | INTERGENIC | |
| SBS | Chr5 | 16646634 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g28430 |
| SBS | Chr5 | 17757064 | C-G | HET | UTR_3_PRIME | |
| SBS | Chr6 | 10772157 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g18950 |
| SBS | Chr6 | 17183083 | A-C | HET | INTERGENIC | |
| SBS | Chr6 | 17941033 | T-A | HET | INTRON | |
| SBS | Chr6 | 5970837 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 7410395 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 14654050 | T-C | HOMO | INTRON | |
| SBS | Chr7 | 20922143 | C-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 5716352 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 6368225 | C-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 3662755 | T-G | HET | INTERGENIC | |
| SBS | Chr8 | 4722612 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 11260066 | T-A | HET | INTRON | |
| SBS | Chr9 | 22888803 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 5916052 | C-T | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1580722 | 1580728 | 6 | |
| Deletion | Chr9 | 3058266 | 3058273 | 7 | |
| Deletion | Chr4 | 5452302 | 5452304 | 2 | LOC_Os04g10100 |
| Deletion | Chr2 | 6305381 | 6305387 | 6 | LOC_Os02g12120 |
| Deletion | Chr1 | 9478522 | 9478523 | 1 | |
| Deletion | Chr2 | 10074660 | 10074661 | 1 | LOC_Os02g17500 |
| Deletion | Chr1 | 11963763 | 11963765 | 2 | |
| Deletion | Chr5 | 13862343 | 13862351 | 8 | LOC_Os05g24050 |
| Deletion | Chr5 | 13878529 | 14088205 | 209676 | 28 |
| Deletion | Chr12 | 14747631 | 14747632 | 1 | |
| Deletion | Chr12 | 15291539 | 15291541 | 2 | |
| Deletion | Chr6 | 19518506 | 19518507 | 1 | |
| Deletion | Chr8 | 19852153 | 19852159 | 6 | LOC_Os08g32000 |
| Deletion | Chr6 | 23002357 | 23002358 | 1 | |
| Deletion | Chr7 | 25640811 | 25640819 | 8 | |
| Deletion | Chr1 | 37254832 | 37254833 | 1 | |
| Deletion | Chr1 | 40807794 | 40817963 | 10169 | 2 |
Insertions: 5
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 6663467 | Chr2 | 24434859 | LOC_Os02g40340 |
| Translocation | Chr9 | 8941257 | Chr1 | 30237200 | |
| Translocation | Chr6 | 22373636 | Chr1 | 40807934 | LOC_Os01g70460 |