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Mutant Information

Mutant Name	FN633-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN633-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14207318	G-A	HET	INTERGENIC
SBS	Chr1	23412500	A-G	HET	INTERGENIC
SBS	Chr1	28046849	G-A	HET	INTRON
SBS	Chr11	13460725	G-A	HET	UTR_3_PRIME
SBS	Chr11	15663712	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g27210
SBS	Chr11	3013525	G-A	HOMO	INTRON
SBS	Chr12	12446267	G-A	HET	INTERGENIC
SBS	Chr12	13319040	G-C	HET	INTRON
SBS	Chr12	14687019	T-G	HET	INTERGENIC
SBS	Chr12	22470436	T-C	HET	INTERGENIC
SBS	Chr12	24661229	A-T	HET	INTERGENIC
SBS	Chr12	8008121	C-A	HET	INTERGENIC
SBS	Chr12	8008123	G-A	HET	INTERGENIC
SBS	Chr2	21927858	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g36330
SBS	Chr2	21927999	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g36330
SBS	Chr2	31089883	T-G	HOMO	INTRON
SBS	Chr2	35404246	T-G	HOMO	INTERGENIC
SBS	Chr3	25358315	C-T	HET	INTERGENIC
SBS	Chr3	30849820	C-T	HET	INTERGENIC
SBS	Chr4	14014457	C-T	HOMO	INTERGENIC
SBS	Chr6	12836975	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g22110
SBS	Chr7	27218674	T-C	HET	INTRON
SBS	Chr7	27218822	A-G	HOMO	INTRON
SBS	Chr7	27218830	C-T	HOMO	INTRON
SBS	Chr8	1596374	T-C	HOMO	INTERGENIC
SBS	Chr8	21832816	G-C	HET	INTERGENIC
SBS	Chr9	10782855	A-G	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	4593	4594	1
Deletion	Chr4	1573888	1573896	8	LOC_Os04g03600
Deletion	Chr9	2588589	2588591	2
Deletion	Chr3	3258012	3258021	9
Deletion	Chr9	3790679	3790688	9
Deletion	Chr3	5391103	5391114	11
Deletion	Chr8	5622001	5659000	37000	7
Deletion	Chr9	7064485	7064488	3
Deletion	Chr12	7596605	7605534	8929	2
Deletion	Chr10	8022132	8022138	6
Deletion	Chr4	9405935	9405946	11	LOC_Os04g17150
Deletion	Chr10	10149217	10149236	19
Deletion	Chr4	13192334	13192336	2
Deletion	Chr8	13566154	13566155	1
Deletion	Chr2	14406996	14407006	10
Deletion	Chr10	14469845	14469846	1
Deletion	Chr2	15159786	15159798	12
Deletion	Chr3	15178611	15178615	4
Deletion	Chr11	15567142	15567143	1
Deletion	Chr11	17660172	17660176	4
Deletion	Chr10	18372630	18372631	1
Deletion	Chr5	19078774	19078775	1
Deletion	Chr9	21252173	21252174	1	LOC_Os09g36850
Deletion	Chr12	26058787	26058789	2
Deletion	Chr2	29451361	29451363	2	LOC_Os02g48100
Deletion	Chr1	34511074	34511080	6	LOC_Os01g59660
Deletion	Chr1	35264855	35264856	1
Deletion	Chr1	40715222	40715223	1
Deletion	Chr1	41725456	41725458	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	24505789	24505790	2
Insertion	Chr6	20677302	20677303	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3680902	3784051	LOC_Os09g07400
Inversion	Chr9	3680913	3784053	LOC_Os09g07400
Inversion	Chr11	10446630	11779307	LOC_Os11g20360
Inversion	Chr2	10674030	13599986
Inversion	Chr2	18843318	19895503	LOC_Os02g33460

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11739316	Chr2	18843349
Translocation	Chr10	11752347	Chr2	19895491	LOC_Os02g33460
Translocation	Chr5	14705825	Chr2	12182619

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