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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29659695	C-G	HET	INTERGENIC
SBS	Chr1	33225716	T-A	HET	SYNONYMOUS_CODING
SBS	Chr1	39881940	A-C	HET	SYNONYMOUS_CODING
SBS	Chr1	39890875	A-G	HET	INTERGENIC
SBS	Chr2	6475396	C-A	HOMO	INTERGENIC
SBS	Chr2	11392242	C-T	HET	INTERGENIC
SBS	Chr2	20729150	T-C	HET	INTRON
SBS	Chr2	24752663	C-A	HOMO	INTRON
SBS	Chr3	1782730	A-T	HET	INTERGENIC
SBS	Chr3	2032542	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04410
SBS	Chr3	10703114	G-T	HOMO	INTRON
SBS	Chr3	29419488	C-A	HET	INTERGENIC
SBS	Chr3	29998917	T-A	HET	INTERGENIC
SBS	Chr4	13685367	A-G	HOMO	INTERGENIC
SBS	Chr4	22070835	C-T	HET	INTRON
SBS	Chr4	25834734	C-T	HOMO	UTR_3_PRIME
SBS	Chr5	10377689	G-T	HET	INTERGENIC
SBS	Chr5	17106249	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g29120
SBS	Chr6	24105093	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr7	21461588	T-A	HOMO	INTERGENIC
SBS	Chr7	23902626	A-G	HET	INTERGENIC
SBS	Chr7	27881074	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	27881075	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46650
SBS	Chr7	28002985	T-C	HET	INTRON
SBS	Chr8	2913662	T-A	HOMO	INTERGENIC
SBS	Chr8	17004818	C-A	HET	INTERGENIC
SBS	Chr9	18935366	T-C	HET	INTERGENIC
SBS	Chr10	249258	T-C	HET	INTERGENIC
SBS	Chr10	4490047	G-C	HOMO	INTERGENIC
SBS	Chr11	22058255	A-T	HET	INTERGENIC
SBS	Chr12	9931646	A-C	HET	INTERGENIC
SBS	Chr12	10521026	C-T	HET	INTERGENIC
SBS	Chr12	14668210	G-T	HET	INTERGENIC
SBS	Chr12	15943162	T-G	HET	INTERGENIC
SBS	Chr12	17582163	G-T	HET	INTERGENIC
SBS	Chr12	20141285	A-C	HET	INTERGENIC
SBS	Chr12	25778826	G-A	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	577511	577516	5	LOC_Os01g02060
Deletion	Chr3	2046957	2046960	3
Deletion	Chr1	3255489	3255499	10
Deletion	Chr5	3290122	3290149	27
Deletion	Chr2	5001895	5001896	1
Deletion	Chr9	8347164	8347173	9
Deletion	Chr8	8968715	8968716	1	LOC_Os08g14880
Deletion	Chr1	9991572	9991574	2	LOC_Os01g17360
Deletion	Chr9	11031746	11034348	2602	LOC_Os09g18020
Deletion	Chr1	11216331	11216344	13
Deletion	Chr9	12640234	12640236	2
Deletion	Chr4	12977157	12977162	5
Deletion	Chr4	13562969	13562972	3
Deletion	Chr9	16995229	16995251	22	LOC_Os09g27970
Deletion	Chr5	17296001	17356000	60000	11
Deletion	Chr5	17427001	17520000	93000	12
Deletion	Chr1	17744831	17744837	6
Deletion	Chr4	18500952	18500954	2
Deletion	Chr7	18929295	18929308	13	LOC_Os07g31850
Deletion	Chr9	20112768	20112775	7	LOC_Os09g34070
Deletion	Chr6	20760651	20760658	7
Deletion	Chr7	28079548	28079563	15
Deletion	Chr11	28809496	28809497	1	LOC_Os11g47770
Deletion	Chr7	28957888	28957891	3	LOC_Os07g48420
Deletion	Chr2	32222750	32222764	14
Deletion	Chr1	33168930	33168938	8	LOC_Os01g57370
Deletion	Chr1	35028266	35028273	7
Deletion	Chr1	35128175	35128182	7
Deletion	Chr1	35131919	35131922	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	25763332	25763335	4
Insertion	Chr9	10403603	10403604	2
Insertion	Chr1	39558652	39558652	1
Insertion	Chr2	15646552	15646552	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5668786	5767378
Inversion	Chr9	10938087	11298647	LOC_Os09g17880
Inversion	Chr5	17295833	17425349	2
Inversion	Chr5	17355916	17399474	LOC_Os05g30070

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6927431	Chr7	19968670	LOC_Os11g12410
Translocation	Chr9	7646145	Chr1	29297423
Translocation	Chr9	7887765	Chr4	20185757
Translocation	Chr9	7887773	Chr4	20184788
Translocation	Chr9	11320978	Chr3	16003407	2
Translocation	Chr9	21552131	Chr2	34253001	LOC_Os09g37310

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