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Mutant Information

Mutant Name	FN666-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN666-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2665738	C-A	HET	INTRON
SBS	Chr1	11759489	C-G	HET	UTR_3_PRIME
SBS	Chr1	19850450	C-T	HET	INTERGENIC
SBS	Chr1	27468427	C-G	HOMO	INTERGENIC
SBS	Chr1	34474204	T-G	HET	INTRON
SBS	Chr2	475052	C-A	HOMO	INTERGENIC
SBS	Chr2	8470659	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g15190
SBS	Chr2	8470660	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	9158504	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16090
SBS	Chr2	22811761	C-T	HOMO	INTERGENIC
SBS	Chr2	25522117	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr3	13971887	T-C	HET	UTR_3_PRIME
SBS	Chr4	21904148	A-C	HET	INTRON
SBS	Chr4	23665718	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39710
SBS	Chr5	16367145	T-C	HET	INTERGENIC
SBS	Chr5	18656884	C-T	HET	INTERGENIC
SBS	Chr5	21202454	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g35710
SBS	Chr5	27658636	G-T	HET	INTERGENIC
SBS	Chr6	2421030	C-T	HET	UTR_3_PRIME
SBS	Chr6	5533460	C-A	HET	INTERGENIC
SBS	Chr6	9081923	C-T	HET	INTERGENIC
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	15087664	A-C	HET	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr7	4047211	C-T	HET	INTERGENIC
SBS	Chr7	5578623	A-G	HOMO	INTERGENIC
SBS	Chr7	6543809	A-G	HOMO	INTERGENIC
SBS	Chr7	12482280	G-A	HOMO	INTERGENIC
SBS	Chr7	21865245	G-C	HOMO	INTRON
SBS	Chr7	27080272	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g45400
SBS	Chr8	11544627	A-C	HET	INTERGENIC
SBS	Chr8	13480939	A-G	HET	INTERGENIC
SBS	Chr8	13480943	A-G	HET	INTERGENIC
SBS	Chr8	24789038	G-A	HOMO	INTERGENIC
SBS	Chr11	2452517	T-A	HOMO	INTERGENIC
SBS	Chr11	2452519	A-T	HOMO	INTERGENIC
SBS	Chr11	7665351	T-A	HOMO	INTERGENIC
SBS	Chr11	15180057	G-A	HOMO	INTERGENIC
SBS	Chr11	15427029	C-T	HET	INTERGENIC
SBS	Chr11	23420110	T-C	HET	INTERGENIC
SBS	Chr12	8362675	G-A	HOMO	INTERGENIC
SBS	Chr12	9751985	C-A	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2505440	2505442	2
Deletion	Chr1	8397964	8397965	1	LOC_Os01g14980
Deletion	Chr2	9140001	9157000	17000	4
Deletion	Chr1	9982534	9982548	14
Deletion	Chr5	11348848	11348850	2
Deletion	Chr2	11584001	11747000	163000	11
Deletion	Chr1	12652676	12652685	9
Deletion	Chr6	14004467	14004487	20
Deletion	Chr8	20862704	20862772	68
Deletion	Chr2	21370566	21370567	1
Deletion	Chr4	21910130	21910131	1
Deletion	Chr8	22605231	22605232	1
Deletion	Chr8	23418007	23418015	8	LOC_Os08g37050
Deletion	Chr7	24144354	24144355	1
Deletion	Chr1	25711129	25711139	10	LOC_Os01g45290
Deletion	Chr11	28782639	28782641	2
Deletion	Chr2	32771280	32999437	228157	33
Deletion	Chr1	33239498	33239507	9
Deletion	Chr3	36197599	36197600	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	12353499	12353502	4
Insertion	Chr6	23632293	23632296	4
Insertion	Chr4	9034764	9034764	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	9139951	11583748	LOC_Os02g16060
Inversion	Chr2	9156687	11850795	2
Inversion	Chr2	32737958	32999434	LOC_Os02g53520
Inversion	Chr2	32737975	32771281	LOC_Os02g53520

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	14501406	Chr2	2772533	2
Translocation	Chr12	21233040	Chr1	30567628	LOC_Os12g34874
Translocation	Chr12	21236676	Chr1	30567610

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