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Mutant Information

Mutant Name	FN671-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN671-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15821258	G-A	HOMO	INTERGENIC
SBS	Chr1	16829295	G-T	HET	INTERGENIC
SBS	Chr1	18221628	C-T	HOMO	INTERGENIC
SBS	Chr1	29997435	C-T	HET	UTR_3_PRIME
SBS	Chr1	8470528	C-T	HOMO	INTERGENIC
SBS	Chr10	15791639	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g30380
SBS	Chr10	15791640	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	4061404	C-A	HET	INTERGENIC
SBS	Chr10	4061405	T-A	HET	INTERGENIC
SBS	Chr10	4061406	G-T	HET	INTERGENIC
SBS	Chr11	28924645	C-T	HOMO	INTERGENIC
SBS	Chr11	8042526	C-A	HET	SYNONYMOUS_CODING
SBS	Chr12	10147438	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g17710
SBS	Chr12	21323821	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr3	16447803	C-T	HET	INTERGENIC
SBS	Chr3	211046	C-T	HOMO	INTRON
SBS	Chr3	25948172	C-T	HET	INTERGENIC
SBS	Chr4	1046544	G-C	HET	INTERGENIC
SBS	Chr4	17164097	T-G	HET	INTERGENIC
SBS	Chr4	23606810	G-C	HOMO	UTR_5_PRIME
SBS	Chr4	3657133	A-G	HET	INTRON
SBS	Chr4	9557051	G-C	HET	INTERGENIC
SBS	Chr5	19586440	T-G	HET	INTERGENIC
SBS	Chr6	14667437	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	28516308	G-C	HET	INTERGENIC
SBS	Chr6	3097460	A-T	HET	INTRON
SBS	Chr6	9401471	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g16430
SBS	Chr7	12911641	C-G	HOMO	INTRON
SBS	Chr7	12911645	A-G	HOMO	INTRON
SBS	Chr7	7596380	A-C	HOMO	INTERGENIC
SBS	Chr7	7596381	C-A	HOMO	INTERGENIC
SBS	Chr8	16609194	T-G	HET	INTERGENIC
SBS	Chr8	3425036	T-C	HET	INTERGENIC
SBS	Chr9	21593839	T-C	HET	INTERGENIC
SBS	Chr9	4157678	C-G	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	444158	444167	9
Deletion	Chr10	447028	447033	5
Deletion	Chr6	1389356	1389357	1	LOC_Os06g03600
Deletion	Chr4	5902655	5902664	9
Deletion	Chr6	13123670	13123677	7
Deletion	Chr1	14251935	14251941	6	LOC_Os01g25230
Deletion	Chr6	16595491	16595494	3
Deletion	Chr12	17985318	17985322	4
Deletion	Chr11	18545136	18545149	13
Deletion	Chr7	20936657	20936662	5
Deletion	Chr8	20953367	20953386	19	LOC_Os08g33560
Deletion	Chr9	20969508	20969512	4
Deletion	Chr6	21076241	21076243	2
Deletion	Chr5	22206169	22206170	1
Deletion	Chr10	22602993	22603007	14
Deletion	Chr12	24591493	24591495	2
Deletion	Chr4	26018450	26018458	8
Deletion	Chr3	28982499	28982501	2
Deletion	Chr2	29081598	29081622	24
Deletion	Chr1	37111016	37111017	1
Deletion	Chr1	37375197	37375204	7
Deletion	Chr1	42795077	42795083	6

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11675483	11675486	4
Insertion	Chr1	26376068	26376068	1
Insertion	Chr11	26038899	26038900	2
Insertion	Chr12	17835352	17835355	4
Insertion	Chr3	31100647	31100648	2
Insertion	Chr4	35002583	35002583	1
Insertion	Chr7	11008823	11008832	10
Insertion	Chr8	13118120	13118120	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14409267	39977242
Inversion	Chr1	14409283	39977009

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3129575	Chr6	18189917
Translocation	Chr10	11338828	Chr6	10850161	2

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