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Mutant Information

Mutant Name	FN672-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN672-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10321040	C-A	HET	INTERGENIC
SBS	Chr1	33758129	G-A	HOMO	INTERGENIC
SBS	Chr1	34864273	A-G	HOMO	INTRON
SBS	Chr1	43085857	T-A	HOMO	INTERGENIC
SBS	Chr10	16607758	C-A	HOMO	INTERGENIC
SBS	Chr11	10306235	C-T	HET	SPLICE_SITE_ACCEPTOR	LOC_Os11g18290
SBS	Chr11	15328066	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	11224151	C-A	HET	INTRON
SBS	Chr12	12948510	C-T	HET	INTERGENIC
SBS	Chr12	9918515	G-T	HET	INTRON
SBS	Chr2	10527094	G-A	HET	INTERGENIC
SBS	Chr2	11256150	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g19270
SBS	Chr2	1142729	C-T	HOMO	INTERGENIC
SBS	Chr2	23618525	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	4973020	C-T	HET	INTRON
SBS	Chr3	19675197	G-C	HET	INTERGENIC
SBS	Chr3	26178145	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46280
SBS	Chr3	29963234	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52190
SBS	Chr3	34391226	C-G	HET	INTERGENIC
SBS	Chr3	7753956	A-T	HET	INTRON
SBS	Chr3	9858485	C-T	HET	INTERGENIC
SBS	Chr4	7781989	T-C	HET	INTRON
SBS	Chr5	4229558	C-T	HOMO	INTERGENIC
SBS	Chr6	25250331	T-A	HET	INTERGENIC
SBS	Chr6	25250332	T-C	HET	INTERGENIC
SBS	Chr6	28604747	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr7	14335964	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25100
SBS	Chr7	18754503	C-T	HET	INTERGENIC
SBS	Chr7	22275493	C-T	HET	INTERGENIC
SBS	Chr7	3756915	A-T	HOMO	INTRON
SBS	Chr7	8002786	T-C	HET	INTRON
SBS	Chr7	9413272	C-T	HET	INTERGENIC
SBS	Chr7	9413274	G-C	HET	INTERGENIC
SBS	Chr8	24203181	G-A	HET	INTERGENIC
SBS	Chr9	18417046	A-T	HOMO	INTRON
SBS	Chr9	7847293	C-T	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2044532	2044549	17	LOC_Os11g04790
Deletion	Chr7	3703481	3703483	2
Deletion	Chr5	4186327	4186334	7
Deletion	Chr7	7070001	7316000	246000	39
Deletion	Chr7	9431001	9602000	171000	16
Deletion	Chr7	9663828	9663836	8	LOC_Os07g16490
Deletion	Chr9	11598211	11598221	10
Deletion	Chr12	12400203	12400208	5
Deletion	Chr5	15693109	15693110	1
Deletion	Chr5	15706869	15706870	1
Deletion	Chr7	17196646	17196664	18
Deletion	Chr8	19354929	19354938	9
Deletion	Chr1	22215023	22215027	4
Deletion	Chr8	23926065	23926071	6
Deletion	Chr5	24838911	24839478	567	LOC_Os05g42410

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	39142990	39142990	1	LOC_Os01g67410
Insertion	Chr12	13982795	13982795	1	LOC_Os12g24490
Insertion	Chr2	17096141	17096143	3
Insertion	Chr4	2331262	2331263	2
Insertion	Chr5	29317059	29317060	2	LOC_Os05g51100
Insertion	Chr6	7510979	7510979	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7070115	9430936

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	16323335	Chr2	8190350
Translocation	Chr3	18216592	Chr1	9105546	LOC_Os03g31839
Translocation	Chr10	19292221	Chr3	31080052
Translocation	Chr11	19861965	Chr7	7093264	2
Translocation	Chr8	27802443	Chr5	24839472	2
Translocation	Chr8	27802448	Chr5	24838923	LOC_Os08g44160

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