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Mutant Information

Mutant Name	FN673-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN673-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21079068	C-A	HOMO	INTRON
SBS	Chr10	10695854	T-G	HOMO	INTERGENIC
SBS	Chr10	7209217	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13350
SBS	Chr10	7380444	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g13610
SBS	Chr10	885369	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g02420
SBS	Chr11	11183588	C-A	HET	SYNONYMOUS_CODING
SBS	Chr11	20300916	A-T	HOMO	INTRON
SBS	Chr11	7391556	G-T	HOMO	INTERGENIC
SBS	Chr12	10844427	G-A	HOMO	INTERGENIC
SBS	Chr12	19447421	T-A	HET	INTERGENIC
SBS	Chr12	8199901	A-T	HET	INTRON
SBS	Chr2	14082178	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24280
SBS	Chr2	23962042	C-T	HOMO	INTERGENIC
SBS	Chr2	29972400	G-A	HET	INTERGENIC
SBS	Chr2	348482	G-A	HET	INTERGENIC
SBS	Chr2	348483	A-T	HET	INTERGENIC
SBS	Chr2	6376474	C-T	HET	INTERGENIC
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr3	9704988	G-T	HOMO	INTRON
SBS	Chr4	26826213	A-G	HET	INTERGENIC
SBS	Chr5	11946045	C-T	HOMO	INTERGENIC
SBS	Chr5	14557293	G-A	HET	INTERGENIC
SBS	Chr5	14557294	C-A	HET	INTERGENIC
SBS	Chr5	20387783	T-C	HOMO	INTRON
SBS	Chr5	20387786	G-T	HOMO	INTRON
SBS	Chr5	20387787	T-A	HOMO	INTRON
SBS	Chr6	10588247	G-A	HOMO	UTR_3_PRIME
SBS	Chr6	12981940	C-T	HET	INTERGENIC
SBS	Chr6	21420894	A-T	HOMO	INTRON
SBS	Chr7	26752557	T-A	HET	INTERGENIC
SBS	Chr7	8475091	A-G	HOMO	INTERGENIC
SBS	Chr8	24530469	A-C	HET	INTERGENIC
SBS	Chr8	28287040	A-G	HET	INTERGENIC
SBS	Chr8	3804896	G-A	HOMO	INTERGENIC
SBS	Chr9	22541764	C-T	HET	INTERGENIC
SBS	Chr9	2569825	G-A	HET	INTRON
SBS	Chr9	5679972	C-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	18738	18739	1
Deletion	Chr9	1307250	1307253	3
Deletion	Chr5	1509716	1509720	4
Deletion	Chr9	4672890	4672906	16
Deletion	Chr6	6112796	6141802	29006	6
Deletion	Chr2	7008748	7008756	8
Deletion	Chr7	7408300	7408303	3
Deletion	Chr9	8284888	8284895	7	LOC_Os09g14019
Deletion	Chr7	9193636	9193648	12
Deletion	Chr9	9468170	9468171	1	LOC_Os09g15470
Deletion	Chr1	11225001	11325000	100000	15
Deletion	Chr1	13932640	13932648	8
Deletion	Chr2	14060964	14060965	1
Deletion	Chr1	14108517	14108542	25
Deletion	Chr5	14563335	14563348	13
Deletion	Chr11	15169118	15169809	691
Deletion	Chr5	15309014	15309015	1
Deletion	Chr7	19026030	19026032	2
Deletion	Chr7	19917077	19917090	13	LOC_Os07g33320
Deletion	Chr10	21565482	21565484	2
Deletion	Chr10	23024022	23024025	3
Deletion	Chr8	25123448	25123456	8
Deletion	Chr4	26640872	26640874	2
Deletion	Chr1	29039332	29039336	4
Deletion	Chr4	29109866	29109874	8

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23798371	23798372	2
Insertion	Chr1	40468997	40468999	3
Insertion	Chr11	22634284	22634285	2
Insertion	Chr11	5372649	5372656	8	LOC_Os11g10040
Insertion	Chr2	17969513	17969514	2
Insertion	Chr3	25745703	25745705	3
Insertion	Chr7	1274621	1274644	24	LOC_Os07g03230
Insertion	Chr7	1455532	1455543	12
Insertion	Chr7	24313236	24313237	2
Insertion	Chr8	20289288	20289290	3
Insertion	Chr9	2166626	2166657	32

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6023183	6188754	LOC_Os11g10910
Inversion	Chr1	9383903	13918587
Inversion	Chr1	11190282	13918447
Inversion	Chr2	12153563	12844308	LOC_Os02g21620

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	4352543	Chr1	11324341
Translocation	Chr11	5104116	Chr6	16925173	2
Translocation	Chr11	6023184	Chr1	11333891	2
Translocation	Chr11	6188756	Chr1	11324809
Translocation	Chr11	10449195	Chr6	17476343	LOC_Os11g18540
Translocation	Chr10	13748729	Chr2	13460116	LOC_Os02g22570
Translocation	Chr6	18200621	Chr2	8950278

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