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Mutant Information

Mutant Name	FN677-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN677-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17320973	G-C	HET	INTRON
SBS	Chr1	18621681	G-T	HET	INTERGENIC
SBS	Chr1	5202738	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g09990
SBS	Chr11	12774387	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22280
SBS	Chr11	18907331	A-T	HET	INTERGENIC
SBS	Chr11	25350644	T-C	HET	INTERGENIC
SBS	Chr11	5735237	T-C	HOMO	INTERGENIC
SBS	Chr12	11102992	C-T	HOMO	INTERGENIC
SBS	Chr12	23501865	T-G	HET	SYNONYMOUS_CODING
SBS	Chr2	2178229	G-T	HOMO	INTRON
SBS	Chr2	21814963	G-A	HET	INTERGENIC
SBS	Chr2	22013194	C-T	HET	INTERGENIC
SBS	Chr3	11363550	T-C	HOMO	INTERGENIC
SBS	Chr3	36061928	G-A	HET	INTERGENIC
SBS	Chr4	17439088	G-A	HET	INTERGENIC
SBS	Chr4	35290050	T-G	HET	INTERGENIC
SBS	Chr4	8348383	G-A	HET	INTRON
SBS	Chr6	15642653	C-G	HET	INTERGENIC
SBS	Chr6	211434	C-T	HET	INTERGENIC
SBS	Chr6	21315787	G-C	HOMO	INTERGENIC
SBS	Chr8	11723691	T-A	HOMO	INTERGENIC
SBS	Chr9	15076580	C-T	HOMO	SYNONYMOUS_CODING

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	226779	226787	8
Deletion	Chr2	973621	973632	11
Deletion	Chr9	1140088	1140094	6
Deletion	Chr11	3126595	3126603	8
Deletion	Chr8	3608797	3608798	1
Deletion	Chr10	12464543	12464556	13
Deletion	Chr5	13336429	13336472	43
Deletion	Chr10	13593884	13593913	29	LOC_Os10g26250
Deletion	Chr1	17335694	17335701	7
Deletion	Chr2	18941568	18941589	21
Deletion	Chr5	19933253	19933255	2
Deletion	Chr9	20837339	20837340	1
Deletion	Chr6	21616282	21616284	2
Deletion	Chr2	22580229	22583398	3169	LOC_Os02g37380
Deletion	Chr6	25231886	25231887	1
Deletion	Chr8	28298003	28298004	1	LOC_Os08g45080
Deletion	Chr6	28620603	28620607	4
Deletion	Chr11	28806505	28806510	5	LOC_Os11g47760

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	30160880	30160880	1
Insertion	Chr11	16919102	16919103	2
Insertion	Chr2	16410052	16410056	5
Insertion	Chr2	5449446	5449448	3

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1877788	Chr2	13467141
Translocation	Chr4	4219145	Chr1	33474476	LOC_Os01g57890
Translocation	Chr12	8840822	Chr9	20497388
Translocation	Chr9	17830458	Chr2	17943521
Translocation	Chr9	17830504	Chr2	17941589
Translocation	Chr11	19832389	Chr5	1765311

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