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Mutant Information

Mutant Name	FN679-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN679-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21738075	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	32824779	A-G	HET	INTERGENIC
SBS	Chr10	22905633	G-T	HOMO	INTERGENIC
SBS	Chr11	10541414	G-C	HET	INTERGENIC
SBS	Chr11	2238474	A-G	HOMO	UTR_3_PRIME
SBS	Chr12	16595360	A-T	HOMO	UTR_5_PRIME
SBS	Chr12	3494949	T-C	HET	INTERGENIC
SBS	Chr2	19517941	C-T	HET	INTERGENIC
SBS	Chr3	20045588	G-C	HET	UTR_5_PRIME
SBS	Chr3	20278590	C-A	HET	INTRON
SBS	Chr3	26371060	A-T	HOMO	INTERGENIC
SBS	Chr3	2972363	G-A	HET	INTERGENIC
SBS	Chr3	6264350	G-A	HET	INTERGENIC
SBS	Chr4	11655052	C-G	HOMO	INTRON
SBS	Chr4	21471422	T-G	HET	INTERGENIC
SBS	Chr4	34609847	A-T	HET	INTERGENIC
SBS	Chr5	24005750	G-A	HET	INTERGENIC
SBS	Chr6	14113466	G-C	HET	INTERGENIC
SBS	Chr6	14829700	T-C	HET	INTRON
SBS	Chr6	22215955	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g37530
SBS	Chr7	26760017	G-A	HOMO	INTERGENIC
SBS	Chr9	21730746	T-C	HOMO	UTR_3_PRIME

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	694227	694229	2	LOC_Os07g02180
Deletion	Chr2	1081909	1081910	1
Deletion	Chr3	2229823	2229831	8
Deletion	Chr10	3478370	3478371	1
Deletion	Chr2	3624001	3640000	16000	LOC_Os02g07070
Deletion	Chr2	4053740	4053744	4
Deletion	Chr6	8755598	8755606	8
Deletion	Chr10	9575379	9575381	2	LOC_Os10g18810
Deletion	Chr7	14143693	14143700	7	LOC_Os07g24870
Deletion	Chr7	17134843	17134846	3
Deletion	Chr12	18736554	18738603	2049	LOC_Os12g31130
Deletion	Chr3	19393111	19393132	21
Deletion	Chr5	19720751	19722195	1444	LOC_Os05g33570
Deletion	Chr11	21037867	21037870	3
Deletion	Chr1	22579910	22579915	5	LOC_Os01g40030
Deletion	Chr12	23272311	23272312	1	LOC_Os12g37860
Deletion	Chr5	23314945	23314953	8
Deletion	Chr2	25132280	25132291	11
Deletion	Chr2	25939563	25939564	1
Deletion	Chr11	27491141	27491143	2
Deletion	Chr2	27944560	27944569	9
Deletion	Chr4	33822950	33822956	6
Deletion	Chr1	41573849	41573857	8

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	26530008	26530008	1

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	18736561	Chr4	33140112	2
Translocation	Chr12	18738602	Chr4	33140076	2
Translocation	Chr6	23038834	Chr3	20268681	LOC_Os03g36560
Translocation	Chr5	26989996	Chr1	32825176
Translocation	Chr5	26989998	Chr1	32818477	LOC_Os01g56820

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