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Mutant Information

Mutant Name	FN680-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN680-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4952797	A-C	HOMO	INTERGENIC
SBS	Chr1	4952799	A-T	HOMO	INTERGENIC
SBS	Chr1	4952801	A-T	HOMO	INTERGENIC
SBS	Chr1	15293916	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g27390
SBS	Chr1	27786502	G-A	HOMO	INTERGENIC
SBS	Chr2	5317791	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g10140
SBS	Chr3	2137861	C-A	HOMO	INTERGENIC
SBS	Chr3	3169907	T-A	HOMO	INTERGENIC
SBS	Chr3	14450513	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	23177706	C-T	HET	INTERGENIC
SBS	Chr3	26509422	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g46860
SBS	Chr3	32051650	G-T	HET	INTERGENIC
SBS	Chr4	25913883	A-T	HET	INTRON
SBS	Chr4	30972102	T-A	HET	INTERGENIC
SBS	Chr5	12284380	C-T	HOMO	INTERGENIC
SBS	Chr5	19296496	T-A	HET	INTERGENIC
SBS	Chr5	19298917	C-T	HET	INTRON
SBS	Chr6	7829293	C-G	HET	UTR_3_PRIME
SBS	Chr6	25269853	C-A	HOMO	UTR_3_PRIME
SBS	Chr7	10483236	G-A	HET	INTERGENIC
SBS	Chr7	21314405	G-A	HET	INTERGENIC
SBS	Chr8	4386576	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	8058628	C-T	HOMO	INTERGENIC
SBS	Chr9	6326850	C-T	HOMO	INTERGENIC
SBS	Chr10	12336317	G-A	HOMO	SPLICE_SITE_ACCEPTOR	LOC_Os10g24070
SBS	Chr11	12774838	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr11	12788717	G-A	HOMO	STOP_GAINED	LOC_Os11g22310
SBS	Chr11	12985606	G-A	HOMO	INTERGENIC
SBS	Chr11	13392434	G-A	HOMO	INTRON
SBS	Chr12	10853432	G-A	HET	INTRON
SBS	Chr12	13053670	A-G	HET	INTERGENIC
SBS	Chr12	14755805	C-A	HET	UTR_3_PRIME

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1626469	1626481	12	LOC_Os01g03840
Deletion	Chr2	6230157	6230158	1	LOC_Os02g12010
Deletion	Chr5	6417919	6417920	1
Deletion	Chr8	8059609	8059614	5
Deletion	Chr1	9174288	9174294	6
Deletion	Chr11	12952756	12952761	5
Deletion	Chr6	13343157	13343158	1
Deletion	Chr4	14104481	14104482	1
Deletion	Chr10	17808149	17808150	1
Deletion	Chr5	21718499	21718500	1	LOC_Os05g37170
Deletion	Chr4	21979546	21979590	44
Deletion	Chr4	22264660	22264668	8	LOC_Os04g36900
Deletion	Chr3	24734821	24734824	3
Deletion	Chr3	31317507	31317508	1	LOC_Os03g55070
Deletion	Chr1	33478380	33478393	13	LOC_Os01g57890

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35770112	35770113	2
Insertion	Chr8	20315618	20315627	10
Insertion	Chr7	3643477	3643479	3
Insertion	Chr2	17850754	17850755	2
Insertion	Chr1	13436372	13436372	1
Insertion	Chr11	3975408	3975408	1
Insertion	Chr3	11565946	11565946	1
Insertion	Chr3	14488026	14488026	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	16247983	16965307
Inversion	Chr7	16248031	16965325
Inversion	Chr12	21494301	21618524	LOC_Os12g35360

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	20388561	Chr2	31750924	2
Translocation	Chr5	20416900	Chr2	31750920	2

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