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Mutant Information

Mutant Name	FN681-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN681-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18195634	C-T	HET	INTERGENIC
SBS	Chr1	19523105	A-T	HOMO	INTERGENIC
SBS	Chr1	32726310	A-C	HOMO	UTR_3_PRIME
SBS	Chr10	11602886	A-T	HET	INTERGENIC
SBS	Chr11	13710718	C-A	HET	INTERGENIC
SBS	Chr11	19365728	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g32780
SBS	Chr11	19900514	G-C	HET	INTERGENIC
SBS	Chr12	15118360	C-T	HET	INTERGENIC
SBS	Chr2	22060112	A-T	HET	INTERGENIC
SBS	Chr3	15972298	C-T	HOMO	INTERGENIC
SBS	Chr3	20089333	G-A	HOMO	STOP_GAINED	LOC_Os03g36220
SBS	Chr3	25379857	A-T	HOMO	INTERGENIC
SBS	Chr3	2701844	C-T	HET	INTERGENIC
SBS	Chr3	28063051	G-A	HET	INTERGENIC
SBS	Chr3	28984926	A-G	HOMO	INTERGENIC
SBS	Chr3	32264530	T-C	HET	INTERGENIC
SBS	Chr4	13987287	T-C	HOMO	INTERGENIC
SBS	Chr4	33864953	G-A	HET	INTERGENIC
SBS	Chr7	25655466	G-A	HET	INTRON
SBS	Chr9	18270369	A-T	HOMO	INTERGENIC
SBS	Chr9	3319285	G-A	HET	INTRON
SBS	Chr9	606901	G-T	HET	INTRON

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	552324	552342	18
Deletion	Chr12	1862095	1862107	12
Deletion	Chr9	4300056	4300063	7
Deletion	Chr5	5585387	5585398	11
Deletion	Chr3	7230261	7230267	6
Deletion	Chr2	7527477	7527481	4
Deletion	Chr3	8157820	8157824	4
Deletion	Chr7	10436265	10436280	15
Deletion	Chr11	10770936	10770970	34
Deletion	Chr6	13483368	13483377	9	LOC_Os06g23114
Deletion	Chr9	13928350	13928351	1
Deletion	Chr9	14040439	14040449	10
Deletion	Chr5	17079372	17079373	1
Deletion	Chr3	17708582	17708586	4
Deletion	Chr10	20801887	20801893	6	LOC_Os10g39030
Deletion	Chr11	21533694	21533702	8
Deletion	Chr2	21594325	21594327	2
Deletion	Chr12	22549316	22549328	12	LOC_Os12g36780
Deletion	Chr3	23552896	23552897	1
Deletion	Chr2	25076770	25076797	27
Deletion	Chr1	25456001	25479000	23000	5
Deletion	Chr3	26167065	26167073	8
Deletion	Chr6	27014913	27014923	10
Deletion	Chr2	27975641	27975666	25
Deletion	Chr4	29438924	29438937	13	LOC_Os04g49320
Deletion	Chr3	29505058	29505067	9
Deletion	Chr4	31824752	31824753	1
Deletion	Chr1	34647647	34647682	35
Deletion	Chr1	40896689	40896692	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	41843295	41843295	1
Insertion	Chr10	17083530	17083530	1
Insertion	Chr10	877217	877217	1
Insertion	Chr2	8864469	8864472	4
Insertion	Chr5	17289595	17289598	4
Insertion	Chr5	18968941	18968945	5

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	30829732	31359096

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4925867	Chr5	19143977
Translocation	Chr12	7838326	Chr4	13987183
Translocation	Chr10	12328205	Chr9	7397854	LOC_Os10g24070
Translocation	Chr2	13467137	Chr1	26060842	LOC_Os01g45880
Translocation	Chr11	17512208	Chr3	19296785
Translocation	Chr9	18304525	Chr8	26519292	LOC_Os08g41960
Translocation	Chr9	18325223	Chr8	26519288	LOC_Os08g41960
Translocation	Chr7	21657432	Chr4	31867779

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