Search Results
Mutant Information |
---|
Mutant Name | FN681-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN681-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
|
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 22
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 18195634 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 19523105 | A-T | HOMO | INTERGENIC | |
SBS | Chr1 | 32726310 | A-C | HOMO | UTR_3_PRIME | |
SBS | Chr2 | 22060112 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 2701844 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 15972298 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 20089333 | G-A | HOMO | STOP_GAINED | LOC_Os03g36220 |
SBS | Chr3 | 25379857 | A-T | HOMO | INTERGENIC | |
SBS | Chr3 | 28063051 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 28984926 | A-G | HOMO | INTERGENIC | |
SBS | Chr3 | 32264530 | T-C | HET | INTERGENIC | |
SBS | Chr4 | 13987287 | T-C | HOMO | INTERGENIC | |
SBS | Chr4 | 33864953 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 25655466 | G-A | HET | INTRON | |
SBS | Chr9 | 606901 | G-T | HET | INTRON | |
SBS | Chr9 | 3319285 | G-A | HET | INTRON | |
SBS | Chr9 | 18270369 | A-T | HOMO | INTERGENIC | |
SBS | Chr10 | 11602886 | A-T | HET | INTERGENIC | |
SBS | Chr11 | 13710718 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 19365728 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g32780 |
SBS | Chr11 | 19900514 | G-C | HET | INTERGENIC | |
SBS | Chr12 | 15118360 | C-T | HET | INTERGENIC |
Deletions: 29
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 552324 | 552342 | 18 | |
Deletion | Chr12 | 1862095 | 1862107 | 12 | |
Deletion | Chr9 | 4300056 | 4300063 | 7 | |
Deletion | Chr5 | 5585387 | 5585398 | 11 | |
Deletion | Chr3 | 7230261 | 7230267 | 6 | |
Deletion | Chr2 | 7527477 | 7527481 | 4 | |
Deletion | Chr3 | 8157820 | 8157824 | 4 | |
Deletion | Chr7 | 10436265 | 10436280 | 15 | |
Deletion | Chr11 | 10770936 | 10770970 | 34 | |
Deletion | Chr6 | 13483368 | 13483377 | 9 | LOC_Os06g23114 |
Deletion | Chr9 | 13928350 | 13928351 | 1 | |
Deletion | Chr9 | 14040439 | 14040449 | 10 | |
Deletion | Chr5 | 17079372 | 17079373 | 1 | |
Deletion | Chr3 | 17708582 | 17708586 | 4 | |
Deletion | Chr10 | 20801887 | 20801893 | 6 | LOC_Os10g39030 |
Deletion | Chr11 | 21533694 | 21533702 | 8 | |
Deletion | Chr2 | 21594325 | 21594327 | 2 | |
Deletion | Chr12 | 22549316 | 22549328 | 12 | LOC_Os12g36780 |
Deletion | Chr3 | 23552896 | 23552897 | 1 | |
Deletion | Chr2 | 25076770 | 25076797 | 27 | |
Deletion | Chr1 | 25456001 | 25479000 | 23000 | 5 |
Deletion | Chr3 | 26167065 | 26167073 | 8 | |
Deletion | Chr6 | 27014913 | 27014923 | 10 | |
Deletion | Chr2 | 27975641 | 27975666 | 25 | |
Deletion | Chr4 | 29438924 | 29438937 | 13 | LOC_Os04g49320 |
Deletion | Chr3 | 29505058 | 29505067 | 9 | |
Deletion | Chr4 | 31824752 | 31824753 | 1 | |
Deletion | Chr1 | 34647647 | 34647682 | 35 | |
Deletion | Chr1 | 40896689 | 40896692 | 3 |
Insertions: 6
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 30829732 | 31359096 |
Translocations: 8
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 4925867 | Chr5 | 19143977 | |
Translocation | Chr12 | 7838326 | Chr4 | 13987183 | |
Translocation | Chr10 | 12328205 | Chr9 | 7397854 | LOC_Os10g24070 |
Translocation | Chr2 | 13467137 | Chr1 | 26060842 | LOC_Os01g45880 |
Translocation | Chr11 | 17512208 | Chr3 | 19296785 | |
Translocation | Chr9 | 18304525 | Chr8 | 26519292 | LOC_Os08g41960 |
Translocation | Chr9 | 18325223 | Chr8 | 26519288 | LOC_Os08g41960 |
Translocation | Chr7 | 21657432 | Chr4 | 31867779 |