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Mutant Information

Mutant Name	FN682-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN682-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30927685	A-G	HET	INTERGENIC
SBS	Chr11	16079426	T-C	HOMO	INTERGENIC
SBS	Chr12	10921573	T-G	HET	INTERGENIC
SBS	Chr12	4620718	T-C	HET	INTERGENIC
SBS	Chr2	29784452	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g48630
SBS	Chr3	3140966	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06260
SBS	Chr3	3140967	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06260
SBS	Chr3	3148661	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06280
SBS	Chr3	7120694	G-T	HET	INTERGENIC
SBS	Chr3	8926891	C-T	HOMO	INTERGENIC
SBS	Chr4	26806711	A-T	HET	INTERGENIC
SBS	Chr4	27056366	A-G	HET	INTERGENIC
SBS	Chr4	5731099	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	4689612	G-A	HOMO	INTERGENIC
SBS	Chr6	7797539	G-C	HOMO	INTERGENIC
SBS	Chr7	20819028	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	10340509	C-T	HET	INTERGENIC
SBS	Chr8	12122585	C-T	HET	INTERGENIC
SBS	Chr8	26544711	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g42020
SBS	Chr8	27802674	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44160

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1404404	1404425	21
Deletion	Chr7	10746203	10746212	9
Deletion	Chr11	13734536	13734537	1	LOC_Os11g24150
Deletion	Chr2	17874717	17874724	7	LOC_Os02g30100
Deletion	Chr5	18599083	18599092	9	LOC_Os05g31930
Deletion	Chr5	18972906	18973183	277
Deletion	Chr11	21280391	21280395	4
Deletion	Chr7	22068231	22068251	20
Deletion	Chr1	22391866	22391872	6
Deletion	Chr9	22880824	22880839	15
Deletion	Chr4	26376001	26393000	17000	5
Deletion	Chr1	26658446	26658454	8
Deletion	Chr1	27101647	27101667	20
Deletion	Chr3	34291448	34291449	1	LOC_Os03g60300
Deletion	Chr1	35831265	35831286	21

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	28281687	28281690	4
Insertion	Chr6	7530175	7530175	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	19858822	20197828

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	18195151	Chr1	19829580	LOC_Os01g35800

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