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Mutant Information

Mutant Name	FN683-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN683-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	4273642	C-T	HET	INTERGENIC
SBS	Chr9	8029339	C-T	HET	INTRON

Deletions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	12471001	12707000	236000	33
Deletion	Chr1	33590001	33624000	34000	5
Deletion	Chr1	40353001	40398000	45000	6

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1677692	1677695	4
Insertion	Chr10	2478261	2478262	2
Insertion	Chr12	23566206	23566207	2
Insertion	Chr6	23312008	23312019	12
Insertion	Chr6	700093	700094	2
Insertion	Chr8	18259593	18259595	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13904265	13908329	LOC_Os06g23800

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5022442	Chr4	12945482
Translocation	Chr4	11340731	Chr2	3399319