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Mutant Information

Mutant Name	FN687-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN687-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3545911	A-T	HET	INTERGENIC
SBS	Chr1	6816563	C-T	HET	INTERGENIC
SBS	Chr1	8801112	G-T	HET	INTERGENIC
SBS	Chr1	13093949	A-T	HET	INTRON
SBS	Chr1	21711852	T-C	HET	INTERGENIC
SBS	Chr1	22634762	T-G	HET	INTRON
SBS	Chr1	29156422	A-T	HET	INTERGENIC
SBS	Chr2	28372268	T-G	HET	INTERGENIC
SBS	Chr2	34639913	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56550
SBS	Chr3	8153624	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g14950
SBS	Chr3	8974597	C-A	HET	INTERGENIC
SBS	Chr3	11761126	T-G	HET	INTERGENIC
SBS	Chr3	26187735	T-C	HET	INTERGENIC
SBS	Chr3	29898834	G-A	HOMO	INTRON
SBS	Chr4	10518786	T-A	HET	INTERGENIC
SBS	Chr4	11784542	G-A	HET	INTRON
SBS	Chr5	2049877	T-G	HET	INTERGENIC
SBS	Chr5	17821020	A-C	HOMO	INTERGENIC
SBS	Chr5	24145988	A-T	HET	INTERGENIC
SBS	Chr6	12720998	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g21990
SBS	Chr6	16005243	T-C	HET	INTRON
SBS	Chr6	20428124	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g35100
SBS	Chr6	26910038	T-C	HET	INTERGENIC
SBS	Chr7	16980549	A-G	HET	INTRON
SBS	Chr7	17329867	C-T	HET	INTERGENIC
SBS	Chr8	15285922	G-A	HET	INTERGENIC
SBS	Chr8	19518774	G-A	HET	INTERGENIC
SBS	Chr8	19518775	G-A	HET	INTERGENIC
SBS	Chr8	20390454	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	22183166	C-A	HET	INTERGENIC
SBS	Chr8	27851721	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44240
SBS	Chr10	18289323	G-A	HET	INTERGENIC
SBS	Chr12	2687099	T-C	HET	INTRON
SBS	Chr12	6787725	G-A	HET	INTRON
SBS	Chr12	18023101	C-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1548302	1551137	2835	LOC_Os09g03210
Deletion	Chr7	1928118	1928122	4
Deletion	Chr12	2063245	2063250	5
Deletion	Chr10	2712614	2712616	2
Deletion	Chr11	3616876	3616897	21	LOC_Os11g07200
Deletion	Chr5	4033493	4033494	1
Deletion	Chr9	5401627	5401634	7	LOC_Os09g09940
Deletion	Chr1	8664822	8664826	4	LOC_Os01g15460
Deletion	Chr3	8698209	8698218	9	LOC_Os03g15770
Deletion	Chr10	9117427	9117429	2
Deletion	Chr1	10339749	10339753	4
Deletion	Chr7	10830554	10830555	1
Deletion	Chr8	12645818	12645821	3
Deletion	Chr8	14288183	14288189	6
Deletion	Chr9	14422156	14422157	1
Deletion	Chr10	16786512	16786516	4
Deletion	Chr6	17190673	17190685	12
Deletion	Chr8	18139158	18139159	1
Deletion	Chr1	22605989	22605990	1	LOC_Os01g40070
Deletion	Chr11	24291001	24310000	19000	LOC_Os11g40690
Deletion	Chr1	25116584	25116590	6	LOC_Os01g43844
Deletion	Chr8	25414566	25414567	1
Deletion	Chr6	26303762	26303766	4
Deletion	Chr8	27883292	27883328	36
Deletion	Chr2	35001790	35001792	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	17819607	17819608	2
Insertion	Chr8	20382113	20382120	8
Insertion	Chr2	12864063	12864066	4
Insertion	Chr11	7087730	7087731	2
Insertion	Chr5	18832874	18832875	2
Insertion	Chr9	8981681	8981682	2
Insertion	Chr4	6649751	6649751	1

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9371962	Chr5	20484691
Translocation	Chr12	12533792	Chr2	15415532	2
Translocation	Chr7	12539989	Chr4	27176363
Translocation	Chr8	16362992	Chr4	18299489
Translocation	Chr3	31848982	Chr2	20082650	LOC_Os02g33680

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