Search Results
Mutant Information |
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Mutant Name | FN690-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN690-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 29
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 4998519 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 5001710 | G-C | HET | INTERGENIC | |
SBS | Chr1 | 6943553 | A-T | HET | INTERGENIC | |
SBS | Chr1 | 8170102 | T-C | HET | INTERGENIC | |
SBS | Chr1 | 22306144 | G-A | HOMO | INTRON | |
SBS | Chr1 | 23263213 | G-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr1 | 24183453 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g42520 |
SBS | Chr1 | 41205553 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g71220 |
SBS | Chr2 | 1128356 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr3 | 26182210 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 30907324 | T-C | HOMO | INTERGENIC | |
SBS | Chr4 | 1254433 | C-A | HOMO | INTRON | |
SBS | Chr4 | 8757267 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 29138465 | A-T | HOMO | INTERGENIC | |
SBS | Chr4 | 31903394 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g53540 |
SBS | Chr5 | 5639031 | T-C | HET | INTRON | |
SBS | Chr5 | 22289725 | G-C | HET | INTERGENIC | |
SBS | Chr6 | 13221963 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22730 |
SBS | Chr8 | 16447489 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 17577783 | C-T | HOMO | INTERGENIC | |
SBS | Chr9 | 5367657 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 6814098 | G-C | HET | INTERGENIC | |
SBS | Chr10 | 6024009 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 5875030 | C-T | HOMO | UTR_3_PRIME | |
SBS | Chr11 | 26497752 | G-A | HET | INTERGENIC | |
SBS | Chr12 | 4394032 | A-T | HET | INTERGENIC | |
SBS | Chr12 | 4974063 | C-T | HET | INTRON | |
SBS | Chr12 | 8314321 | T-A | HET | INTERGENIC | |
SBS | Chr12 | 20799558 | C-T | HOMO | INTERGENIC |
Deletions: 20
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr7 | 209737 | 209780 | 43 | |
Deletion | Chr4 | 4805200 | 4805203 | 3 | |
Deletion | Chr9 | 5139397 | 5139398 | 1 | |
Deletion | Chr5 | 5368248 | 5368252 | 4 | |
Deletion | Chr2 | 5965171 | 5965172 | 1 | |
Deletion | Chr2 | 5978035 | 5978042 | 7 | |
Deletion | Chr2 | 6026046 | 6026050 | 4 | |
Deletion | Chr4 | 6225950 | 6225961 | 11 | LOC_Os04g11390 |
Deletion | Chr10 | 11571643 | 11571644 | 1 | LOC_Os10g22370 |
Deletion | Chr2 | 11784614 | 11784615 | 1 | LOC_Os02g20010 |
Deletion | Chr12 | 12844794 | 12844797 | 3 | |
Deletion | Chr10 | 13390357 | 13390362 | 5 | |
Deletion | Chr7 | 14667864 | 14667882 | 18 | |
Deletion | Chr2 | 21542456 | 21627121 | 84665 | 14 |
Deletion | Chr12 | 21788624 | 21788626 | 2 | |
Deletion | Chr2 | 24494214 | 24494236 | 22 | LOC_Os02g40430 |
Deletion | Chr3 | 26234180 | 26234181 | 1 | |
Deletion | Chr3 | 26742567 | 26742569 | 2 | |
Deletion | Chr11 | 28177754 | 28177776 | 22 | |
Deletion | Chr1 | 31257061 | 31257074 | 13 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr4 | 27670046 | 27670050 | 5 | |
Insertion | Chr8 | 15195584 | 15195595 | 12 | |
Insertion | Chr3 | 12367866 | 12367868 | 3 |
No Inversion
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr8 | 3097227 | Chr5 | 5079458 | |
Translocation | Chr9 | 10385681 | Chr7 | 15262552 | |
Translocation | Chr7 | 14475395 | Chr3 | 22581365 | LOC_Os07g25340 |
Translocation | Chr7 | 14481712 | Chr3 | 22581340 | |
Translocation | Chr2 | 15723259 | Chr1 | 9625506 | LOC_Os02g26780 |
Translocation | Chr3 | 25354096 | Chr1 | 27882664 |
Tandem duplications: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Tandem Duplication | Chr5 | 5079591 | 5199634 | 120043 |