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Mutant Information

Mutant Name	FN691-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN691-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6497456	C-T	HET	INTRON
SBS	Chr1	25709771	C-G	HET	SYNONYMOUS_CODING
SBS	Chr1	32797313	A-G	HET	INTERGENIC
SBS	Chr1	37543489	G-T	HET	INTERGENIC
SBS	Chr2	11766395	G-A	HOMO	INTERGENIC
SBS	Chr2	26196908	G-A	HET	INTERGENIC
SBS	Chr2	30239532	T-A	HET	INTERGENIC
SBS	Chr3	1502860	T-C	HET	INTRON
SBS	Chr4	1435395	T-C	HET	INTERGENIC
SBS	Chr4	9737289	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17770
SBS	Chr4	33792082	T-A	HOMO	INTERGENIC
SBS	Chr4	33792083	T-A	HOMO	INTERGENIC
SBS	Chr5	10567448	G-A	HET	INTERGENIC
SBS	Chr5	14050171	A-G	HOMO	INTERGENIC
SBS	Chr6	9706472	G-A	HET	INTERGENIC
SBS	Chr7	915777	C-T	HET	INTERGENIC
SBS	Chr7	27576931	A-T	HOMO	INTERGENIC
SBS	Chr8	3292822	C-T	HET	INTERGENIC
SBS	Chr8	25748033	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40660
SBS	Chr8	27768973	C-T	HET	INTERGENIC
SBS	Chr9	16447956	G-T	HET	UTR_3_PRIME
SBS	Chr9	16447957	T-A	HET	UTR_3_PRIME
SBS	Chr9	16700431	T-A	HET	INTERGENIC
SBS	Chr10	10088681	A-T	HET	INTERGENIC
SBS	Chr10	10449091	T-G	HET	INTRON
SBS	Chr10	22118599	T-A	HET	INTRON
SBS	Chr11	17542950	C-A	HOMO	STOP_GAINED	LOC_Os11g30170
SBS	Chr12	25804505	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g41680

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1848784	1848790	6	LOC_Os08g03880
Deletion	Chr11	7212544	7212561	17
Deletion	Chr2	7530953	7530961	8
Deletion	Chr5	7641092	7641104	12
Deletion	Chr10	7908311	7908317	6
Deletion	Chr3	9110902	9110903	1	LOC_Os03g16530
Deletion	Chr10	10783630	10783649	19
Deletion	Chr11	11261037	11291608	30571	6
Deletion	Chr12	12978577	12978578	1
Deletion	Chr1	13574393	13574398	5
Deletion	Chr12	14056118	14056125	7	LOC_Os12g24580
Deletion	Chr7	15585201	15585204	3
Deletion	Chr8	16265549	16265555	6
Deletion	Chr7	16321075	16321077	2
Deletion	Chr9	16700412	16700425	13
Deletion	Chr8	17411354	17411355	1
Deletion	Chr1	18140211	18140212	1
Deletion	Chr10	18294203	18294204	1
Deletion	Chr10	19929847	19929851	4	LOC_Os10g37240
Deletion	Chr11	20201056	20201059	3
Deletion	Chr5	20718056	20718250	194
Deletion	Chr2	20723114	20723131	17
Deletion	Chr10	21516755	21516766	11	LOC_Os10g40190
Deletion	Chr8	21712155	21712169	14
Deletion	Chr8	21757247	21757254	7
Deletion	Chr7	25448740	25470581	21841	5
Deletion	Chr2	26233477	26233502	25	LOC_Os02g43460
Deletion	Chr12	26858640	26858647	7	LOC_Os12g43270
Deletion	Chr2	30862692	30862706	14
Deletion	Chr2	33544135	33544144	9
Deletion	Chr1	35821610	35821625	15

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	10224923	10224924	2	LOC_Os03g18230
Insertion	Chr2	18534196	18534197	2
Insertion	Chr1	3253467	3253467	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10597245	11408991	LOC_Os08g19114

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	10833243	Chr1	13032787	2

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