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Mutant Information

Mutant Name	FN692-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN692-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14928894	G-T	HET	INTERGENIC
SBS	Chr1	17833819	G-T	HET	INTERGENIC
SBS	Chr1	20335370	C-T	HET	INTERGENIC
SBS	Chr1	23771899	G-C	HET	INTERGENIC
SBS	Chr1	24985921	C-G	HET	INTERGENIC
SBS	Chr1	36517071	C-A	HET	INTERGENIC
SBS	Chr10	1353092	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g03200
SBS	Chr10	18618366	C-T	HOMO	INTRON
SBS	Chr10	18618367	A-T	HOMO	INTRON
SBS	Chr11	11477660	G-A	HOMO	INTERGENIC
SBS	Chr11	133525	T-C	HOMO	INTRON
SBS	Chr11	22879613	G-A	HET	INTRON
SBS	Chr11	4784101	A-T	HET	INTERGENIC
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr12	12500361	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	12500362	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22190
SBS	Chr12	12922767	G-A	HET	INTERGENIC
SBS	Chr12	25900663	A-T	HET	INTERGENIC
SBS	Chr2	25926034	C-T	HOMO	INTRON
SBS	Chr2	2791140	C-T	HET	INTERGENIC
SBS	Chr2	32764606	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr2	3598467	C-T	HET	INTERGENIC
SBS	Chr3	17003714	T-C	HOMO	INTERGENIC
SBS	Chr3	17643327	G-T	HOMO	INTERGENIC
SBS	Chr3	2796346	G-A	HOMO	INTERGENIC
SBS	Chr3	3088662	G-A	HOMO	INTERGENIC
SBS	Chr4	10955733	A-T	HOMO	INTERGENIC
SBS	Chr5	10856288	C-G	HET	INTERGENIC
SBS	Chr5	13998357	G-A	HET	INTRON
SBS	Chr5	17553893	G-A	HET	INTERGENIC
SBS	Chr5	19884892	G-A	HOMO	INTERGENIC
SBS	Chr5	20543683	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g34640
SBS	Chr6	16196322	A-T	HET	INTERGENIC
SBS	Chr7	13005329	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	3623912	C-A	HOMO	INTRON
SBS	Chr8	11649009	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	17695018	G-T	HET	INTERGENIC
SBS	Chr8	19355242	C-A	HET	INTERGENIC
SBS	Chr8	8934050	G-A	HOMO	INTERGENIC
SBS	Chr8	8934051	T-A	HOMO	INTERGENIC
SBS	Chr9	3618784	C-T	HET	INTERGENIC
SBS	Chr9	5495450	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	405576	405578	2
Deletion	Chr9	535167	535169	2
Deletion	Chr3	3508047	3508096	49
Deletion	Chr5	6372001	6403000	31000	4
Deletion	Chr9	7867437	7867443	6
Deletion	Chr3	8120088	8120096	8
Deletion	Chr11	10577951	10577975	24
Deletion	Chr6	12797399	12797402	3
Deletion	Chr1	16689534	16689612	78
Deletion	Chr3	17236455	17236456	1
Deletion	Chr10	17826197	17826198	1
Deletion	Chr2	19766889	19766892	3
Deletion	Chr5	20478998	20479000	2
Deletion	Chr8	20752829	20752842	13
Deletion	Chr12	20986407	20986417	10
Deletion	Chr1	22176269	22176282	13
Deletion	Chr8	24021710	24021711	1
Deletion	Chr5	24829119	24829130	11

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12717709	12717709	1
Insertion	Chr6	25000292	25000293	2
Insertion	Chr8	16701441	16701442	2
Insertion	Chr8	20085411	20085412	2
Insertion	Chr9	15428300	15428301	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1919998	19701657	LOC_Os11g33310
Inversion	Chr1	17214942	17242957	LOC_Os01g31470
Inversion	Chr1	17215524	17242960	LOC_Os01g31470

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	138559	Chr1	17215506	2
Translocation	Chr8	138570	Chr1	502159	2
Translocation	Chr7	226868	Chr2	21806144
Translocation	Chr7	13101031	Chr6	21809536	2
Translocation	Chr11	18672151	Chr7	4798108	LOC_Os11g31810
Translocation	Chr10	19398843	Chr8	19810524
Translocation	Chr5	22882401	Chr1	545019
Translocation	Chr5	22882414	Chr1	544784

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