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Mutant Information

Mutant Name	FN693-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN693-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7154641	T-A	HET	INTERGENIC
SBS	Chr1	7154642	T-A	HET	INTERGENIC
SBS	Chr11	5689698	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g10440
SBS	Chr11	5689699	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	7929399	G-T	HET	INTERGENIC
SBS	Chr3	1931453	G-T	HOMO	INTERGENIC
SBS	Chr8	12391654	C-T	HET	INTERGENIC
SBS	Chr8	22473195	C-A	HET	INTERGENIC

Deletions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	6946742	7154582	207840	26
Deletion	Chr1	11609371	11609372	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	32056874	32056874	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	16356620	Chr3	25791604	2
Translocation	Chr4	17869030	Chr2	16127611