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Mutant Information

Mutant Name	FN695-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN695-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11186571	A-T	HET	INTERGENIC
SBS	Chr1	28805962	G-A	HOMO	INTERGENIC
SBS	Chr1	3986488	G-A	HET	INTERGENIC
SBS	Chr10	6955497	A-C	HET	INTERGENIC
SBS	Chr11	5277175	C-A	HOMO	INTRON
SBS	Chr12	10525984	C-T	HOMO	INTERGENIC
SBS	Chr12	10525985	T-A	HOMO	INTERGENIC
SBS	Chr12	27445063	G-C	HET	INTERGENIC
SBS	Chr2	10238283	G-T	HET	INTERGENIC
SBS	Chr2	21094027	T-A	HOMO	INTERGENIC
SBS	Chr2	9280587	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g16320
SBS	Chr3	20054016	G-A	HOMO	INTRON
SBS	Chr3	21553602	C-T	HOMO	INTERGENIC
SBS	Chr5	14289248	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	23526877	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40050
SBS	Chr5	24399807	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	29312305	G-A	HET	STOP_GAINED	LOC_Os05g51080
SBS	Chr5	6193515	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g11060
SBS	Chr6	10794688	C-T	HET	INTRON
SBS	Chr6	22427494	A-G	HET	INTERGENIC
SBS	Chr6	23163144	G-C	HET	INTERGENIC
SBS	Chr6	29803213	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49185
SBS	Chr6	30887872	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g51050
SBS	Chr7	1445595	A-G	HET	INTERGENIC
SBS	Chr7	14811812	A-T	HOMO	INTERGENIC
SBS	Chr8	12181242	G-A	HET	INTERGENIC
SBS	Chr8	24257743	T-A	HET	INTERGENIC
SBS	Chr8	24257745	G-A	HET	INTERGENIC
SBS	Chr8	27459081	C-T	HET	INTRON
SBS	Chr8	6885407	G-A	HET	INTERGENIC
SBS	Chr8	7524565	G-A	HET	INTERGENIC
SBS	Chr8	7524566	C-T	HET	INTERGENIC
SBS	Chr8	9581802	A-T	HET	INTERGENIC

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	9534458	9534464	6
Deletion	Chr12	11745074	11745075	1
Deletion	Chr7	14811813	14811814	1
Deletion	Chr6	19555015	19555022	7	LOC_Os06g33580
Deletion	Chr8	24928001	25118000	190000	27
Deletion	Chr3	29097388	29097394	6
Deletion	Chr4	34111435	34111442	7	LOC_Os04g57290

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	26163275	26163277	3
Insertion	Chr9	11342421	11342422	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14550621	14709990
Inversion	Chr1	14709997	14954737
Inversion	Chr1	16912069	16949155
Inversion	Chr2	23441741	23963874	LOC_Os02g38780
Inversion	Chr12	24982339	25044363

No Translocation

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