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| Mutant Information |
|---|
| Mutant Name | FN696-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN696-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
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| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19730614 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 22773725 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 25116275 | T-C | HET | INTRON | |
| SBS | Chr1 | 26896431 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 28883959 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 14480752 | G-A | HOMO | INTRON | |
| SBS | Chr11 | 8088195 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 7413502 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 10199560 | T-A | HOMO | INTRON | |
| SBS | Chr3 | 11940482 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 1838424 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g04030 |
| SBS | Chr3 | 19572778 | G-C | HET | INTERGENIC | |
| SBS | Chr4 | 10533445 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 10630786 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 1314852 | C-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 15325223 | C-A | HET | STOP_GAINED | LOC_Os04g26290 |
| SBS | Chr4 | 21587666 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 25691711 | G-A | HET | INTRON | |
| SBS | Chr5 | 14528682 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 16497248 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 18217872 | T-C | HET | INTRON | |
| SBS | Chr5 | 20369899 | T-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 7831420 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 20211010 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 23397452 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 9888541 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 13711245 | C-G | HET | INTERGENIC | |
| SBS | Chr7 | 16319716 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 18745419 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 7980723 | A-T | HOMO | INTERGENIC |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 2656869 | 2656882 | 13 | |
| Deletion | Chr7 | 2708982 | 2708983 | 1 | LOC_Os07g05670 |
| Deletion | Chr4 | 10968952 | 10968957 | 5 | LOC_Os04g19660 |
| Deletion | Chr2 | 14104531 | 14104534 | 3 | |
| Deletion | Chr12 | 19500573 | 19500574 | 1 | |
| Deletion | Chr8 | 23120735 | 23120737 | 2 |
No Insertion
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 3456282 | 3812762 | LOC_Os08g06820 |
| Inversion | Chr4 | 5196216 | 6153007 | |
| Inversion | Chr4 | 5196227 | 6153004 | |
| Inversion | Chr6 | 24217662 | 24268928 | LOC_Os06g40710 |
| Inversion | Chr6 | 24217688 | 24268962 | LOC_Os06g40710 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 21281575 | Chr3 | 32136500 | |
| Translocation | Chr9 | 21281580 | Chr3 | 32134689 | |
| Translocation | Chr6 | 24268924 | Chr3 | 32136618 | LOC_Os06g40710 |
| Translocation | Chr11 | 27826722 | Chr6 | 25898116 |