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Mutant Information

Mutant Name	FN697-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN697-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25830907	A-C	HOMO	INTERGENIC
SBS	Chr2	14210764	T-G	HET	INTERGENIC
SBS	Chr2	31275011	G-A	HET	INTRON
SBS	Chr3	15689670	T-C	HET	INTERGENIC
SBS	Chr4	1409643	G-T	HET	INTRON
SBS	Chr4	14778207	C-A	HET	INTERGENIC
SBS	Chr5	22469044	A-G	HET	INTRON
SBS	Chr5	24119241	A-G	HET	INTRON
SBS	Chr6	30942451	G-T	HET	INTERGENIC
SBS	Chr7	72742	A-T	HET	INTERGENIC
SBS	Chr8	18117421	G-A	HET	INTRON
SBS	Chr9	2187873	A-G	HOMO	INTERGENIC
SBS	Chr11	13877822	A-T	HET	INTERGENIC
SBS	Chr12	8605889	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g15080

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1317630	1317632	2	LOC_Os11g03440
Deletion	Chr5	8542972	8542985	13
Deletion	Chr12	15131001	15191000	60000	6
Deletion	Chr12	15202001	15236000	34000	2
Deletion	Chr12	15238001	15434000	196000	23
Deletion	Chr9	18149451	18149453	2
Deletion	Chr12	20287340	20287345	5
Deletion	Chr11	20481774	20481778	4
Deletion	Chr1	22273840	22273844	4	LOC_Os01g39530

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	32407123	32407124	2

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	7958285	Chr6	16350751
Translocation	Chr6	9332410	Chr4	21893260	LOC_Os04g35910
Translocation	Chr6	9333815	Chr4	21893227	LOC_Os06g16360
Translocation	Chr10	12222493	Chr3	25289519
Translocation	Chr4	16416653	Chr1	32335245	LOC_Os01g56150