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Mutant Information

Mutant Name	FN698-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN698-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12317371	G-T	HET	INTERGENIC
SBS	Chr1	31239023	C-A	HET	INTERGENIC
SBS	Chr2	2517330	C-A	HET	UTR_3_PRIME
SBS	Chr2	21218680	A-T	HOMO	INTERGENIC
SBS	Chr3	3683541	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g07200
SBS	Chr3	8925284	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g16180
SBS	Chr4	1378513	G-A	HET	INTERGENIC
SBS	Chr4	12687985	C-G	HET	INTRON
SBS	Chr4	30755630	C-A	HET	INTERGENIC
SBS	Chr4	30755631	G-A	HET	INTERGENIC
SBS	Chr4	31329668	T-G	HET	INTERGENIC
SBS	Chr4	31329669	C-A	HET	INTERGENIC
SBS	Chr5	8467233	C-A	HET	INTERGENIC
SBS	Chr5	15267463	C-T	HOMO	INTERGENIC
SBS	Chr5	22457239	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	31197012	T-C	HET	INTERGENIC
SBS	Chr7	15155013	C-A	HET	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	26083854	C-T	HET	INTERGENIC
SBS	Chr7	27629743	G-A	HOMO	SYNONYMOUS_STOP
SBS	Chr9	19833103	G-A	HET	INTERGENIC
SBS	Chr10	7843931	C-A	HOMO	INTERGENIC
SBS	Chr11	1383057	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g03570
SBS	Chr11	3558776	C-T	HOMO	INTERGENIC
SBS	Chr11	26633553	C-T	HET	INTERGENIC
SBS	Chr12	7674321	T-C	HET	INTERGENIC
SBS	Chr12	10758222	G-A	HET	INTRON
SBS	Chr12	15083047	G-C	HET	INTERGENIC

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2074168	2074171	3
Deletion	Chr11	15527552	15527555	3
Deletion	Chr6	22814482	22814483	1
Deletion	Chr6	23101963	23101965	2	LOC_Os06g38940
Deletion	Chr11	23304940	23304944	4
Deletion	Chr5	27920681	27920682	1

No Insertion

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	22122978	22556251
Inversion	Chr9	22122993	22556254
Inversion	Chr4	25152193	25209141	2
Inversion	Chr4	25166195	25209139	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2501637	Chr7	5831659	LOC_Os11g05540
Translocation	Chr9	13448267	Chr8	7145699	2
Translocation	Chr2	19415457	Chr1	33587562	LOC_Os02g32690

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