Search Results

Mutant Information

Mutant Name	FN701-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN701-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6850716	G-A	HOMO	INTERGENIC
SBS	Chr1	10730299	A-G	HET	INTERGENIC
SBS	Chr1	40672743	T-C	HET	INTERGENIC
SBS	Chr2	3726160	C-G	HOMO	INTERGENIC
SBS	Chr2	12750398	T-C	HET	INTERGENIC
SBS	Chr2	15182097	G-T	HET	INTERGENIC
SBS	Chr2	16294550	A-C	HET	INTRON
SBS	Chr2	26368314	A-G	HET	INTERGENIC
SBS	Chr2	31949815	G-A	HET	INTERGENIC
SBS	Chr3	1020052	G-C	HET	UTR_3_PRIME
SBS	Chr3	2939611	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05850
SBS	Chr3	5271831	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g10334
SBS	Chr3	17944360	G-A	HET	INTERGENIC
SBS	Chr3	32858907	C-T	HOMO	INTERGENIC
SBS	Chr3	34231871	T-C	HOMO	INTRON
SBS	Chr4	7721802	C-T	HET	INTERGENIC
SBS	Chr4	15930417	G-A	HET	INTERGENIC
SBS	Chr5	10110812	G-A	HET	INTERGENIC
SBS	Chr5	12227012	C-A	HET	INTERGENIC
SBS	Chr5	15069844	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g25910
SBS	Chr5	24586870	G-A	HET	INTERGENIC
SBS	Chr6	26682959	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44230
SBS	Chr8	4081625	G-T	HOMO	INTRON
SBS	Chr8	10407652	G-A	HOMO	INTERGENIC
SBS	Chr8	13168110	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g21970
SBS	Chr8	19170691	G-A	HOMO	INTERGENIC
SBS	Chr8	26503517	T-A	HET	INTRON
SBS	Chr9	4236149	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g08180
SBS	Chr9	4236150	A-T	HOMO	STOP_GAINED	LOC_Os09g08180
SBS	Chr9	4236152	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g08180
SBS	Chr9	8996989	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	8996990	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g14990
SBS	Chr10	15725851	C-T	HET	INTERGENIC
SBS	Chr10	20993200	G-T	HET	INTERGENIC
SBS	Chr11	580294	A-G	HOMO	INTRON
SBS	Chr11	22309303	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37730
SBS	Chr11	28626838	A-T	HET	INTERGENIC
SBS	Chr12	7397489	C-T	HOMO	INTERGENIC
SBS	Chr12	16052271	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	26910928	G-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	103893	103904	11
Deletion	Chr9	130262	130289	27
Deletion	Chr3	327226	356502	29276	5
Deletion	Chr11	579565	607034	27469	7
Deletion	Chr3	1781001	1871000	90000	16
Deletion	Chr5	2164752	2164753	1
Deletion	Chr8	2465191	2465197	6
Deletion	Chr3	3109020	3109033	13	LOC_Os03g06190
Deletion	Chr8	3194768	3194770	2
Deletion	Chr10	3629691	3629959	268
Deletion	Chr9	4408736	4408746	10	LOC_Os09g08450
Deletion	Chr2	5722189	5722191	2
Deletion	Chr4	8341138	8341139	1
Deletion	Chr7	11700349	11700353	4
Deletion	Chr7	11758300	11758303	3
Deletion	Chr5	16351030	16351031	1
Deletion	Chr8	17862076	17862082	6
Deletion	Chr7	22644319	22644324	5
Deletion	Chr9	22769660	22769661	1
Deletion	Chr6	24618315	24618319	4
Deletion	Chr8	24622550	24622551	1
Deletion	Chr11	25679441	25679449	8
Deletion	Chr12	26359369	26359381	12	LOC_Os12g42410
Deletion	Chr7	26609590	26609595	5
Deletion	Chr8	27371640	27371649	9
Deletion	Chr6	29120764	29120815	51	LOC_Os06g48130

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	34768945	34768945	1
Insertion	Chr11	4866717	4866718	2	LOC_Os11g09140
Insertion	Chr2	18025170	18025171	2
Insertion	Chr3	16124928	16124928	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2044495	Chr4	12757392	LOC_Os10g04342
Translocation	Chr11	3435043	Chr10	466399
Translocation	Chr11	22938433	Chr6	1671809

Main menu

You are here

Search Results