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Mutant Information

Mutant Name	FN702-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN702-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28075	G-C	HET	INTRON
SBS	Chr1	11027731	C-A	HET	INTRON
SBS	Chr1	35837142	A-T	HOMO	INTERGENIC
SBS	Chr2	4668547	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g09100
SBS	Chr2	7832039	A-T	HET	INTERGENIC
SBS	Chr2	23849577	G-A	HOMO	INTERGENIC
SBS	Chr2	25920402	A-G	HET	INTERGENIC
SBS	Chr3	14822144	C-G	HET	INTERGENIC
SBS	Chr4	4461835	A-G	HOMO	UTR_5_PRIME
SBS	Chr4	10465734	G-A	HET	INTERGENIC
SBS	Chr5	3872095	A-T	HET	INTERGENIC
SBS	Chr5	3890972	G-A	HET	INTERGENIC
SBS	Chr5	12178208	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20750
SBS	Chr5	12357998	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g21000
SBS	Chr5	19730264	C-T	HET	INTRON
SBS	Chr6	2617627	C-T	HOMO	INTRON
SBS	Chr6	14946703	C-T	HET	INTRON
SBS	Chr7	3330390	C-T	HET	INTERGENIC
SBS	Chr7	4063314	G-A	HET	INTERGENIC
SBS	Chr7	8099578	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14210
SBS	Chr7	13415831	C-A	HET	INTERGENIC
SBS	Chr7	16549786	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28350
SBS	Chr7	29296513	T-A	HET	INTRON
SBS	Chr8	1206557	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g02860
SBS	Chr8	2053597	C-T	HOMO	INTERGENIC
SBS	Chr8	24587643	C-A	HET	INTRON
SBS	Chr8	25163325	G-A	HET	INTERGENIC
SBS	Chr8	27074923	G-A	HET	INTERGENIC
SBS	Chr9	4960346	G-C	HET	INTERGENIC
SBS	Chr9	5580347	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10240
SBS	Chr9	12006115	T-A	HOMO	INTRON
SBS	Chr12	1898014	C-T	HOMO	INTRON
SBS	Chr12	8437833	C-T	HET	INTERGENIC
SBS	Chr12	14947532	G-A	HET	INTERGENIC
SBS	Chr12	22929920	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37340

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	3846752	3846765	13
Deletion	Chr7	4704001	4777000	73000	14
Deletion	Chr2	5398468	5398469	1
Deletion	Chr5	6241487	6241488	1	LOC_Os05g11110
Deletion	Chr6	7749760	7749761	1
Deletion	Chr12	7850473	7850483	10
Deletion	Chr7	8501854	8501860	6	LOC_Os07g14850
Deletion	Chr5	8882570	8882571	1
Deletion	Chr4	8982318	8982321	3
Deletion	Chr5	9062012	9062017	5	LOC_Os05g16054
Deletion	Chr12	11216675	11216694	19
Deletion	Chr1	11860852	11860858	6
Deletion	Chr1	14791728	14791734	6
Deletion	Chr1	15284287	15284288	1	LOC_Os01g27370
Deletion	Chr9	16070754	16070755	1
Deletion	Chr3	19492409	19516913	24504	7
Deletion	Chr5	19625000	19625007	7
Deletion	Chr11	19794118	19794120	2
Deletion	Chr9	21957928	21957938	10
Deletion	Chr6	22837294	22849566	12272	2
Deletion	Chr1	24191641	24191662	21
Deletion	Chr1	27724557	27724558	1
Deletion	Chr6	28793051	28793122	71
Deletion	Chr4	30205334	30205341	7	LOC_Os04g51020
Deletion	Chr2	32623036	32623073	37
Deletion	Chr3	35207867	35207868	1	LOC_Os03g62150

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	34010048	34010048	1
Insertion	Chr6	26597810	26597811	2
Insertion	Chr1	2566850	2566861	12
Insertion	Chr12	4867927	4867933	7
Insertion	Chr11	28862757	28862759	3
Insertion	Chr6	23545576	23545578	3

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3011954	14294731	LOC_Os03g25040
Inversion	Chr7	3320389	4279272	LOC_Os07g06810
Inversion	Chr7	3352928	4280938
Inversion	Chr9	11748472	12027860	2
Inversion	Chr9	11748487	12027875	2
Inversion	Chr3	19018399	19516881	2
Inversion	Chr3	19018415	19492414	LOC_Os03g33240

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3320401	Chr4	22142223	LOC_Os07g06810
Translocation	Chr7	4777219	Chr4	22144291	LOC_Os04g36650
Translocation	Chr6	22837309	Chr2	4251621	LOC_Os06g38550
Translocation	Chr6	22849539	Chr2	4251607
Translocation	Chr11	27838260	Chr7	27296787	LOC_Os07g45720

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