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Mutant Information

Mutant Name	FN703-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN703-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24223132	C-A	HOMO	INTERGENIC
SBS	Chr1	33389482	T-A	HET	INTERGENIC
SBS	Chr1	33946824	C-T	HOMO	INTERGENIC
SBS	Chr1	33946825	A-T	HOMO	INTERGENIC
SBS	Chr10	21186617	C-T	HET	INTERGENIC
SBS	Chr11	12555908	A-T	HET	INTRON
SBS	Chr11	12555910	A-T	HET	INTRON
SBS	Chr11	12555922	A-T	HET	INTRON
SBS	Chr11	14183016	G-A	HET	INTERGENIC
SBS	Chr12	12647790	A-T	HET	INTERGENIC
SBS	Chr12	23921278	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	4545776	A-G	HET	INTERGENIC
SBS	Chr2	10604647	T-A	HOMO	STOP_GAINED	LOC_Os02g18290
SBS	Chr2	13430377	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22500
SBS	Chr2	5062215	A-T	HET	INTERGENIC
SBS	Chr2	7354673	G-A	HOMO	INTERGENIC
SBS	Chr3	15290720	T-A	HET	INTERGENIC
SBS	Chr3	4823754	C-T	HET	INTERGENIC
SBS	Chr4	34045794	A-T	HOMO	INTRON
SBS	Chr4	4436280	T-A	HET	INTERGENIC
SBS	Chr5	20813911	G-A	HET	INTERGENIC
SBS	Chr5	9550566	A-G	HET	INTERGENIC
SBS	Chr6	4147602	A-G	HET	INTRON
SBS	Chr7	11113504	A-C	HET	INTERGENIC
SBS	Chr7	21746335	G-T	HET	INTERGENIC
SBS	Chr8	10519098	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	24714072	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	24714073	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g39120
SBS	Chr9	11043095	G-A	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	883792	883795	3
Deletion	Chr10	2984185	2984190	5
Deletion	Chr9	3626202	3626206	4	LOC_Os09g07320
Deletion	Chr1	4009468	4009469	1
Deletion	Chr4	4436289	4436290	1
Deletion	Chr12	5162000	5162008	8
Deletion	Chr1	10056002	10056003	1
Deletion	Chr11	12558973	12558997	24
Deletion	Chr3	13936284	13936296	12
Deletion	Chr3	14551646	14551662	16
Deletion	Chr4	14608407	14608408	1
Deletion	Chr8	15133801	15133802	1	LOC_Os08g24960
Deletion	Chr3	18043014	18043015	1
Deletion	Chr3	19324475	19324477	2	LOC_Os03g33819
Deletion	Chr12	26693227	26693231	4
Deletion	Chr1	32251192	32302322	51130	10
Deletion	Chr1	33819594	33819611	17
Deletion	Chr1	33943786	33943793	7	LOC_Os01g58720

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	24576638	24576640	3
Insertion	Chr6	4296614	4296614	1
Insertion	Chr7	27494351	27494351	1
Insertion	Chr9	12110405	12110405	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8364533	8624180	LOC_Os01g14926

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8840820	Chr7	19482316
Translocation	Chr4	11414792	Chr2	18483433
Translocation	Chr9	14290348	Chr4	2584774	2

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