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Mutant Information

Mutant Name	FN705-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN705-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15635508	G-A	HOMO	INTERGENIC
SBS	Chr1	18217342	G-A	HOMO	INTERGENIC
SBS	Chr1	7790911	T-C	HOMO	INTERGENIC
SBS	Chr10	10329901	C-A	HET	INTERGENIC
SBS	Chr11	23872871	T-C	HET	INTERGENIC
SBS	Chr11	24640939	G-A	HET	INTERGENIC
SBS	Chr11	28170155	A-G	HOMO	INTERGENIC
SBS	Chr11	28398796	G-T	HOMO	INTERGENIC
SBS	Chr11	28501199	T-C	HOMO	INTERGENIC
SBS	Chr12	17214516	T-A	HET	INTRON
SBS	Chr4	28552887	G-A	HOMO	INTERGENIC
SBS	Chr4	4339416	G-A	HOMO	INTRON
SBS	Chr4	5642611	T-A	HOMO	INTERGENIC
SBS	Chr5	10500327	C-A	HOMO	INTERGENIC
SBS	Chr5	19073740	C-T	HET	INTRON
SBS	Chr6	11565940	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20160
SBS	Chr6	11565941	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20160
SBS	Chr7	25364323	G-T	HET	SYNONYMOUS_CODING
SBS	Chr7	25532632	T-G	HET	INTRON
SBS	Chr7	26885495	A-G	HET	INTERGENIC
SBS	Chr8	10418243	C-T	HOMO	INTERGENIC
SBS	Chr9	10876601	A-T	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1116054	1116057	3
Deletion	Chr2	5370968	5370969	1
Deletion	Chr2	5518803	5518804	1
Deletion	Chr4	5914920	5914924	4
Deletion	Chr10	6397208	6397210	2
Deletion	Chr5	6555110	6555112	2
Deletion	Chr5	8673573	8673574	1
Deletion	Chr10	9355076	9355082	6	LOC_Os10g18400
Deletion	Chr9	10157575	10157577	2
Deletion	Chr9	13727779	13727787	8
Deletion	Chr3	16176335	16176347	12
Deletion	Chr4	18348981	18348987	6
Deletion	Chr10	19504120	19504149	29
Deletion	Chr3	20280726	20280730	4	LOC_Os03g36570
Deletion	Chr7	20885444	20885452	8	LOC_Os07g34850
Deletion	Chr5	22831493	22831494	1
Deletion	Chr4	26713426	26713455	29	LOC_Os04g45190
Deletion	Chr3	31724580	31724582	2
Deletion	Chr1	33058050	33058052	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	22634284	22634285	2
Insertion	Chr2	24576638	24576640	3
Insertion	Chr3	15073979	15073980	2
Insertion	Chr5	6390419	6390419	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	33017502	33499055

No Translocation

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