Search Results
Mutant Information |
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Mutant Name | FN705-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN705-S Alignment File |
Seed Availability | No |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 22
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 7790911 | T-C | HOMO | INTERGENIC | |
SBS | Chr1 | 15635508 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 18217342 | G-A | HOMO | INTERGENIC | |
SBS | Chr4 | 4339416 | G-A | HOMO | INTRON | |
SBS | Chr4 | 5642611 | T-A | HOMO | INTERGENIC | |
SBS | Chr4 | 28552887 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 10500327 | C-A | HOMO | INTERGENIC | |
SBS | Chr5 | 19073740 | C-T | HET | INTRON | |
SBS | Chr6 | 11565940 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g20160 |
SBS | Chr6 | 11565941 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g20160 |
SBS | Chr7 | 25364323 | G-T | HET | SYNONYMOUS_CODING | |
SBS | Chr7 | 25532632 | T-G | HET | INTRON | |
SBS | Chr7 | 26885495 | A-G | HET | INTERGENIC | |
SBS | Chr8 | 10418243 | C-T | HOMO | INTERGENIC | |
SBS | Chr9 | 10876601 | A-T | HET | INTRON | |
SBS | Chr10 | 10329901 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 23872871 | T-C | HET | INTERGENIC | |
SBS | Chr11 | 24640939 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 28170155 | A-G | HOMO | INTERGENIC | |
SBS | Chr11 | 28398796 | G-T | HOMO | INTERGENIC | |
SBS | Chr11 | 28501199 | T-C | HOMO | INTERGENIC | |
SBS | Chr12 | 17214516 | T-A | HET | INTRON |
Deletions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr3 | 1116054 | 1116057 | 3 | |
Deletion | Chr2 | 5370968 | 5370969 | 1 | |
Deletion | Chr2 | 5518803 | 5518804 | 1 | |
Deletion | Chr4 | 5914920 | 5914924 | 4 | |
Deletion | Chr10 | 6397208 | 6397210 | 2 | |
Deletion | Chr5 | 6555110 | 6555112 | 2 | |
Deletion | Chr5 | 8673573 | 8673574 | 1 | |
Deletion | Chr10 | 9355076 | 9355082 | 6 | LOC_Os10g18400 |
Deletion | Chr9 | 10157575 | 10157577 | 2 | |
Deletion | Chr9 | 13727779 | 13727787 | 8 | |
Deletion | Chr3 | 16176335 | 16176347 | 12 | |
Deletion | Chr4 | 18348981 | 18348987 | 6 | |
Deletion | Chr10 | 19504120 | 19504149 | 29 | |
Deletion | Chr3 | 20280726 | 20280730 | 4 | LOC_Os03g36570 |
Deletion | Chr7 | 20885444 | 20885452 | 8 | LOC_Os07g34850 |
Deletion | Chr5 | 22831493 | 22831494 | 1 | |
Deletion | Chr4 | 26713426 | 26713455 | 29 | LOC_Os04g45190 |
Deletion | Chr3 | 31724580 | 31724582 | 2 | |
Deletion | Chr1 | 33058050 | 33058052 | 2 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 24576638 | 24576640 | 3 | |
Insertion | Chr3 | 15073979 | 15073980 | 2 | |
Insertion | Chr5 | 6390419 | 6390419 | 1 | |
Insertion | Chr11 | 22634284 | 22634285 | 2 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 33017502 | 33499055 |
No Translocation