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Mutant Information

Mutant Name	FN706-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN706-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14258265	T-G	HET	INTERGENIC
SBS	Chr1	21985779	T-A	HET	INTERGENIC
SBS	Chr1	21985780	T-A	HET	INTERGENIC
SBS	Chr1	22065278	T-A	HET	INTERGENIC
SBS	Chr1	28950462	A-T	HET	INTERGENIC
SBS	Chr10	17875071	C-T	HOMO	SPLICE_SITE_REGION
SBS	Chr10	3030801	A-T	HET	INTERGENIC
SBS	Chr10	5040174	C-A	HET	INTERGENIC
SBS	Chr11	13133227	G-T	HET	INTRON
SBS	Chr11	20117033	C-T	HET	INTERGENIC
SBS	Chr11	20860547	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr12	12392165	A-T	HET	INTERGENIC
SBS	Chr12	21841571	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35840
SBS	Chr2	22267927	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g36890
SBS	Chr2	26257590	T-A	HET	INTERGENIC
SBS	Chr2	26335582	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g43640
SBS	Chr3	1475240	C-T	HET	INTERGENIC
SBS	Chr3	35551044	T-C	HET	INTRON
SBS	Chr4	33037971	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55530
SBS	Chr4	35154990	C-T	HET	INTERGENIC
SBS	Chr5	944039	G-T	HOMO	INTRON
SBS	Chr6	15531156	G-A	HET	INTRON
SBS	Chr6	25435764	A-G	HET	INTERGENIC
SBS	Chr6	26480459	G-A	HET	INTERGENIC
SBS	Chr6	30184351	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g49860
SBS	Chr7	18667199	C-A	HET	INTERGENIC
SBS	Chr9	9676857	G-T	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3102001	3102003	2
Deletion	Chr8	3345001	3359000	14000
Deletion	Chr6	5440982	5458843	17861	3
Deletion	Chr11	7084400	7084419	19
Deletion	Chr11	8488473	8488474	1	LOC_Os11g15080
Deletion	Chr1	8705425	8705426	1
Deletion	Chr11	8995770	8995772	2
Deletion	Chr2	9443849	9443850	1
Deletion	Chr10	9814214	9814215	1
Deletion	Chr11	13237022	13237024	2
Deletion	Chr2	15125621	15125629	8	LOC_Os02g25810
Deletion	Chr1	19163008	19163012	4	LOC_Os01g34730
Deletion	Chr12	19744316	19744317	1
Deletion	Chr4	22503088	22503093	5
Deletion	Chr2	27771121	27771122	1
Deletion	Chr8	28224904	28224905	1
Deletion	Chr3	32796225	32796228	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	9674265	9674265	1
Insertion	Chr6	9671118	9671118	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3066982	3134794	LOC_Os12g06400
Inversion	Chr3	12308268	13771694
Inversion	Chr3	12310846	13771702	LOC_Os03g21540

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2998746	Chr1	37755113
Translocation	Chr11	8214649	Chr5	29794245
Translocation	Chr9	9423699	Chr4	16367932	LOC_Os09g15389
Translocation	Chr4	16367929	Chr3	31096626	LOC_Os03g54240
Translocation	Chr4	16367932	Chr2	10703345
Translocation	Chr11	17023429	Chr4	16367929
Translocation	Chr12	19571670	Chr6	18237490	LOC_Os12g32440

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