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Mutant Information

Mutant Name	FN707-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN707-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38142319	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g65680
SBS	Chr1	38588814	T-A	HET	INTERGENIC
SBS	Chr1	9044620	G-A	HET	UTR_5_PRIME
SBS	Chr10	982981	C-A	HET	INTERGENIC
SBS	Chr11	13405182	T-A	HET	INTERGENIC
SBS	Chr11	14732159	G-C	HET	INTERGENIC
SBS	Chr12	3523474	A-C	HOMO	SYNONYMOUS_CODING
SBS	Chr2	2791140	C-T	HOMO	INTERGENIC
SBS	Chr2	3598467	C-T	HOMO	INTERGENIC
SBS	Chr3	23123639	G-A	HOMO	INTERGENIC
SBS	Chr3	28043010	G-A	HET	INTERGENIC
SBS	Chr3	32151485	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g56400
SBS	Chr3	34569952	A-T	HET	INTERGENIC
SBS	Chr3	5074720	T-A	HET	INTERGENIC
SBS	Chr4	5933905	T-G	HET	INTERGENIC
SBS	Chr5	14463559	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	21307241	G-A	HET	INTERGENIC
SBS	Chr7	13054458	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g23150
SBS	Chr7	17126534	G-A	HET	UTR_5_PRIME
SBS	Chr7	26651054	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44670
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr8	16519419	T-C	HET	UTR_3_PRIME
SBS	Chr8	18572031	T-C	HET	INTERGENIC
SBS	Chr8	18887584	A-G	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	6392949	6392956	7
Deletion	Chr2	9601657	9601671	14
Deletion	Chr2	9986001	10088000	102000	15
Deletion	Chr9	10169632	10169642	10
Deletion	Chr4	10399239	10399240	1	LOC_Os04g18740
Deletion	Chr10	13123195	13123202	7
Deletion	Chr8	13386163	13386174	11
Deletion	Chr7	15194790	15194811	21
Deletion	Chr4	15219036	15219037	1
Deletion	Chr5	17318001	17329000	11000	3
Deletion	Chr7	18401352	18401367	15
Deletion	Chr9	19360454	19360479	25
Deletion	Chr1	19681332	19681334	2
Deletion	Chr7	20073528	20073530	2
Deletion	Chr6	20466493	20466497	4
Deletion	Chr6	22132053	22132083	30
Deletion	Chr4	25717465	25717473	8	LOC_Os04g43464
Deletion	Chr1	27093827	27093828	1
Deletion	Chr4	30509910	30516791	6881	LOC_Os04g51500
Deletion	Chr3	33134033	33134037	4
Deletion	Chr3	36260865	36260882	17

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	40943600	40943600	1
Insertion	Chr12	18733654	18733655	2
Insertion	Chr3	27926181	27926181	1
Insertion	Chr4	17630012	17630014	3
Insertion	Chr4	20031884	20031886	3
Insertion	Chr5	17688592	17688592	1
Insertion	Chr6	22140214	22140215	2
Insertion	Chr7	15365896	15365896	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1758003	2244293	LOC_Os07g05084
Inversion	Chr9	21862112	21930558	LOC_Os09g37920
Inversion	Chr9	21862130	22033958	LOC_Os09g37920
Inversion	Chr4	22960983	24114891

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	13420575	Chr5	28001412	LOC_Os07g23760
Translocation	Chr9	22033927	Chr3	34912138
Translocation	Chr6	23451445	Chr2	19764967

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