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Mutant Information

Mutant Name	FN708-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN708-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15061381	C-A	HET	INTRON
SBS	Chr2	19080089	C-T	HET	INTERGENIC
SBS	Chr2	19554991	T-G	HET	INTRON
SBS	Chr3	19492209	T-C	HOMO	INTERGENIC
SBS	Chr3	21010040	A-T	HOMO	INTERGENIC
SBS	Chr3	30939108	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	5889372	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	10223902	G-A	HET	INTRON
SBS	Chr4	26955492	A-C	HET	INTRON
SBS	Chr4	27205963	A-T	HET	INTRON
SBS	Chr5	7158067	C-T	HOMO	INTERGENIC
SBS	Chr5	17136128	T-C	HOMO	INTERGENIC
SBS	Chr6	2838128	A-G	HOMO	INTRON
SBS	Chr6	13014862	A-G	HOMO	INTERGENIC
SBS	Chr6	13016460	A-G	HOMO	INTERGENIC
SBS	Chr6	23676060	T-C	HET	INTERGENIC
SBS	Chr6	24582769	A-T	HET	INTERGENIC
SBS	Chr6	25933901	T-A	HET	INTRON
SBS	Chr7	23225113	G-A	HET	INTERGENIC
SBS	Chr8	3729895	T-G	HET	INTERGENIC
SBS	Chr8	4603888	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08110
SBS	Chr8	20024673	T-C	HET	INTERGENIC
SBS	Chr10	5470864	T-C	HET	INTERGENIC
SBS	Chr10	6361108	C-A	HET	INTERGENIC
SBS	Chr10	19816201	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g36990
SBS	Chr11	5345233	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g09970
SBS	Chr11	28930657	A-T	HET	INTERGENIC
SBS	Chr12	21877955	T-C	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2233534	2233565	31
Deletion	Chr9	3621485	3621487	2
Deletion	Chr8	3738847	3738849	2
Deletion	Chr8	5227515	5227518	3
Deletion	Chr11	5494909	5494923	14
Deletion	Chr5	5622114	5622170	56
Deletion	Chr4	5671722	5671723	1
Deletion	Chr7	10945497	10945511	14	LOC_Os07g18500
Deletion	Chr11	11764745	11764871	126
Deletion	Chr8	12259578	12259584	6	LOC_Os08g20410
Deletion	Chr9	12584841	12584844	3
Deletion	Chr9	16231893	16231897	4
Deletion	Chr4	17102396	17102397	1
Deletion	Chr3	17450896	17450909	13
Deletion	Chr10	17503036	17503051	15	LOC_Os10g33310
Deletion	Chr12	17521429	17521431	2
Deletion	Chr1	18934145	18934146	1
Deletion	Chr1	19112393	19112395	2
Deletion	Chr7	22684227	22684262	35
Deletion	Chr4	26952944	26952945	1
Deletion	Chr8	27539470	27539479	9
Deletion	Chr2	28515771	28515775	4
Deletion	Chr3	34447522	34447523	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	23632293	23632296	4
Insertion	Chr7	12851170	12851171	2
Insertion	Chr5	27114800	27114800	1
Insertion	Chr6	9031431	9031431	1

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4312807	Chr4	25107855
Translocation	Chr11	6945279	Chr4	34439362	LOC_Os11g12430
Translocation	Chr11	9031430	Chr7	23098290
Translocation	Chr12	15184221	Chr3	34394755	LOC_Os03g60509
Translocation	Chr6	22701538	Chr4	28778244	LOC_Os06g38320

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