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Mutant Information

Mutant Name	FN710-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN710-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13723886	C-T	HET	INTERGENIC
SBS	Chr10	12526758	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g24420
SBS	Chr10	12526764	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g24420
SBS	Chr11	26998036	A-G	HET	INTERGENIC
SBS	Chr11	9890785	T-G	HOMO	INTERGENIC
SBS	Chr2	28283095	A-C	HET	INTERGENIC
SBS	Chr2	33279299	C-T	HET	INTERGENIC
SBS	Chr3	22559076	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g40560
SBS	Chr3	33127137	C-A	HOMO	INTERGENIC
SBS	Chr5	26530191	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g45800
SBS	Chr5	9528190	T-A	HET	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	20200554	T-C	HOMO	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	25618121	T-A	HET	INTRON
SBS	Chr8	25705362	T-A	HET	INTERGENIC
SBS	Chr8	25714714	G-A	HET	INTRON
SBS	Chr8	25803115	G-C	HET	INTRON
SBS	Chr8	25865783	G-A	HET	INTERGENIC
SBS	Chr9	982985	C-T	HOMO	STOP_GAINED	LOC_Os09g02380

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	6523506	6523516	10	LOC_Os05g11520
Deletion	Chr7	9974792	9974802	10
Deletion	Chr12	11328408	11328413	5	LOC_Os12g19480
Deletion	Chr10	14349547	14349548	1
Deletion	Chr3	14371473	14371485	12
Deletion	Chr12	14628470	14628481	11
Deletion	Chr4	15124820	15124826	6
Deletion	Chr1	18121119	18121130	11	LOC_Os01g32990
Deletion	Chr7	18892088	18892089	1
Deletion	Chr1	22370532	22370538	6
Deletion	Chr7	23149258	23149259	1	LOC_Os07g38530
Deletion	Chr1	26488929	26488933	4
Deletion	Chr11	28335266	28335281	15	LOC_Os11g47120
Deletion	Chr11	28477935	28477950	15	LOC_Os11g47330
Deletion	Chr4	30211037	30211045	8
Deletion	Chr1	31903643	31903644	1
Deletion	Chr1	37349333	37349334	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	27647359	27647360	2
Insertion	Chr7	11683274	11683274	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr8	16899692	20420907
Inversion	Chr12	21632331	22275843
Inversion	Chr12	21632775	22275926

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11340076	Chr5	5644421	2
Translocation	Chr12	21632384	Chr9	1910555
Translocation	Chr11	23182361	Chr8	19904704	LOC_Os08g32090
Translocation	Chr11	23182370	Chr8	19917866	LOC_Os08g32100

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