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Mutant Information

Mutant Name	FN711-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN711-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25247238	A-T	HET	INTERGENIC
SBS	Chr1	26328581	G-A	HET	INTERGENIC
SBS	Chr1	3393632	G-A	HET	INTERGENIC
SBS	Chr1	34990975	A-T	HET	INTERGENIC
SBS	Chr1	41206915	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g71220
SBS	Chr10	17345168	A-G	HET	INTERGENIC
SBS	Chr11	17301569	C-T	HOMO	INTERGENIC
SBS	Chr11	19247396	C-A	HOMO	INTERGENIC
SBS	Chr12	14200120	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24750
SBS	Chr12	20875092	G-A	HET	INTERGENIC
SBS	Chr2	6306913	G-A	HET	INTRON
SBS	Chr2	8987635	A-T	HET	UTR_5_PRIME
SBS	Chr3	11912972	C-T	HOMO	INTERGENIC
SBS	Chr3	6383840	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g12160
SBS	Chr3	7538188	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g13900
SBS	Chr4	10275190	T-A	HET	INTRON
SBS	Chr4	15915452	T-C	HET	INTERGENIC
SBS	Chr4	23215951	C-T	HET	INTRON
SBS	Chr4	4983606	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g09360
SBS	Chr5	11749525	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	14911797	G-T	HET	INTERGENIC
SBS	Chr5	16934256	G-A	HET	INTERGENIC
SBS	Chr5	29891655	A-T	HET	INTRON
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr8	10583423	C-G	HET	INTERGENIC
SBS	Chr8	20692824	C-T	HET	INTERGENIC
SBS	Chr8	20692825	C-T	HET	INTERGENIC
SBS	Chr9	14690705	C-T	HET	INTERGENIC
SBS	Chr9	5496117	A-C	HET	INTERGENIC
SBS	Chr9	981317	C-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1483849	1483854	5
Deletion	Chr1	1739214	1739215	1	LOC_Os01g04010
Deletion	Chr4	2273232	2273237	5
Deletion	Chr7	3143254	3143267	13
Deletion	Chr6	3921001	3933000	12000	3
Deletion	Chr2	6299542	6299543	1
Deletion	Chr11	8073240	8073252	12	LOC_Os11g14380
Deletion	Chr4	9401837	9401838	1
Deletion	Chr6	10784913	10784914	1
Deletion	Chr4	12723899	12723908	9
Deletion	Chr11	12924779	12924782	3
Deletion	Chr5	13287153	13287156	3
Deletion	Chr4	15311624	15311633	9	LOC_Os04g26250
Deletion	Chr2	18990679	18990692	13
Deletion	Chr10	18993078	18993081	3
Deletion	Chr4	19457354	19457359	5	LOC_Os04g32460
Deletion	Chr2	20262115	20262117	2
Deletion	Chr10	22162172	22162178	6	LOC_Os10g41240
Deletion	Chr1	23533533	23989928	456395	68
Deletion	Chr5	26131319	26131344	25
Deletion	Chr3	32778005	32778007	2
Deletion	Chr1	33208924	33208925	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	6179376	6179377	2
Insertion	Chr6	12066029	12066029	1
Insertion	Chr6	27435499	27435499	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6585867	6588953	LOC_Os04g12000
Inversion	Chr4	6588976	7980584	2
Inversion	Chr8	12181573	13781862
Inversion	Chr8	12181589	13781870
Inversion	Chr1	17167806	17535659	LOC_Os01g32030

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5024481	Chr3	31077495
Translocation	Chr7	21235194	Chr4	6585797	LOC_Os07g35500

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