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Mutant Information

Mutant Name	FN712-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN712-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7473342	T-C	HET	INTERGENIC
SBS	Chr10	1742161	G-A	HET	INTRON
SBS	Chr10	253726	C-T	HET	INTERGENIC
SBS	Chr10	3437519	T-C	HET	INTERGENIC
SBS	Chr11	3303753	A-T	HET	INTERGENIC
SBS	Chr12	10491810	A-G	HET	INTRON
SBS	Chr12	693130	C-T	HOMO	INTRON
SBS	Chr2	11323901	G-A	HET	INTERGENIC
SBS	Chr2	14870314	A-T	HOMO	SPLICE_SITE_REGION
SBS	Chr2	23559698	G-A	HOMO	INTERGENIC
SBS	Chr2	35160086	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57380
SBS	Chr2	35297033	C-T	HET	INTERGENIC
SBS	Chr2	35331126	T-C	HET	INTRON
SBS	Chr3	32071746	T-A	HET	INTERGENIC
SBS	Chr3	3841589	T-C	HET	INTERGENIC
SBS	Chr4	1468057	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g03420
SBS	Chr4	17524063	C-T	HET	INTRON
SBS	Chr4	30613890	C-T	HET	INTERGENIC
SBS	Chr4	7781595	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13930
SBS	Chr5	18025599	C-T	HET	INTERGENIC
SBS	Chr5	25625627	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44070
SBS	Chr6	14654524	C-T	HOMO	INTRON
SBS	Chr7	15151600	G-A	HET	INTRON
SBS	Chr7	26496780	C-T	HOMO	INTERGENIC
SBS	Chr8	20725407	G-C	HOMO	INTERGENIC
SBS	Chr8	28036660	G-A	HET	INTERGENIC
SBS	Chr8	28344444	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	5947716	T-C	HET	UTR_5_PRIME
SBS	Chr9	2745806	A-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2411145	2411146	1
Deletion	Chr9	4738257	4738271	14
Deletion	Chr6	5333293	5333297	4
Deletion	Chr2	5539085	5539098	13
Deletion	Chr5	6159240	6159243	3
Deletion	Chr7	6218090	6218093	3
Deletion	Chr11	6642110	6642125	15
Deletion	Chr1	9943001	9956000	13000	2
Deletion	Chr6	10191381	10191382	1
Deletion	Chr5	14213648	14213650	2
Deletion	Chr4	14746035	14746073	38
Deletion	Chr1	15460691	15460694	3
Deletion	Chr4	15529287	15529298	11
Deletion	Chr10	15601765	15601767	2	LOC_Os10g30054
Deletion	Chr5	16410486	16410501	15
Deletion	Chr11	17770003	17770018	15
Deletion	Chr5	17780367	17780371	4	LOC_Os05g30700
Deletion	Chr5	17852239	17852259	20
Deletion	Chr1	21349814	21349819	5
Deletion	Chr8	21559220	21559221	1
Deletion	Chr9	22042663	22042685	22	LOC_Os09g38320
Deletion	Chr2	23923687	23923695	8
Deletion	Chr6	26925753	26925773	20	LOC_Os06g44590
Deletion	Chr6	29195208	29195214	6
Deletion	Chr1	30705742	30705744	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	21772174	21772175	2
Insertion	Chr2	23924212	23924212	1
Insertion	Chr3	12114390	12114391	2
Insertion	Chr5	21765747	21765750	4
Insertion	Chr8	16396233	16396258	26

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5583112	5763039	2
Inversion	Chr1	5763043	5826530	2
Inversion	Chr2	33652756	35680031
Inversion	Chr2	33652816	35680032

No Translocation

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