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Mutant Information

Mutant Name	FN713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN713-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16156299	A-G	HOMO	INTERGENIC
SBS	Chr1	28575831	T-C	HET	UTR_3_PRIME
SBS	Chr1	29824040	G-A	HET	INTERGENIC
SBS	Chr1	30711493	C-T	HET	INTERGENIC
SBS	Chr1	40538347	C-T	HET	INTERGENIC
SBS	Chr1	8604426	C-T	HET	INTERGENIC
SBS	Chr10	16464903	C-G	HET	SYNONYMOUS_CODING
SBS	Chr10	3378812	C-T	HOMO	INTERGENIC
SBS	Chr11	13194112	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22950
SBS	Chr11	20922939	C-T	HET	INTERGENIC
SBS	Chr11	8430313	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	27487980	C-T	HET	INTRON
SBS	Chr2	12881435	C-T	HOMO	INTERGENIC
SBS	Chr2	30118310	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	30118311	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	30385093	G-T	HET	INTERGENIC
SBS	Chr3	17243360	C-T	HOMO	INTERGENIC
SBS	Chr3	2061986	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04440
SBS	Chr3	28634153	C-T	HOMO	INTRON
SBS	Chr3	2893819	G-A	HET	INTERGENIC
SBS	Chr4	29988826	G-T	HOMO	INTERGENIC
SBS	Chr5	2004108	C-T	HOMO	INTERGENIC
SBS	Chr5	24180913	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	28275783	C-A	HET	INTERGENIC
SBS	Chr5	5841851	T-A	HOMO	INTERGENIC
SBS	Chr5	8869297	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	26338811	A-G	HET	INTRON
SBS	Chr7	8326870	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14600
SBS	Chr8	13633940	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g22660
SBS	Chr8	14522525	C-T	HOMO	INTRON
SBS	Chr8	16595349	C-T	HOMO	INTRON
SBS	Chr8	3030420	G-A	HET	INTERGENIC
SBS	Chr8	5975918	T-C	HOMO	INTERGENIC
SBS	Chr9	10164374	T-G	HET	INTERGENIC
SBS	Chr9	11750154	T-C	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	219574	219577	3
Deletion	Chr1	1103135	1103139	4
Deletion	Chr8	2106827	2106829	2
Deletion	Chr1	3721275	3721304	29	LOC_Os01g07750
Deletion	Chr3	6363054	6363059	5	LOC_Os03g12120
Deletion	Chr11	10852930	10852931	1	LOC_Os11g19030
Deletion	Chr10	11141367	11141374	7
Deletion	Chr11	13972953	13972973	20
Deletion	Chr10	14197741	14197751	10	LOC_Os10g26960
Deletion	Chr5	16384435	16384452	17
Deletion	Chr1	18222604	18222610	6
Deletion	Chr8	19176710	19176713	3
Deletion	Chr12	21609945	21609964	19
Deletion	Chr1	21657724	21657746	22
Deletion	Chr5	21817496	21817503	7
Deletion	Chr10	23087741	23087742	1
Deletion	Chr6	24868173	24868174	1	LOC_Os06g41480
Deletion	Chr6	27055631	27055632	1
Deletion	Chr1	27251249	27251296	47
Deletion	Chr6	27791332	27791432	100
Deletion	Chr6	27990540	27990550	10	LOC_Os06g46180
Deletion	Chr1	30106375	30106376	1	LOC_Os01g52400
Deletion	Chr2	32223953	32223954	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	4878367	4878368	2
Insertion	Chr4	20701596	20701597	2
Insertion	Chr7	11316860	11316866	7
Insertion	Chr7	1525156	1525156	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	36312464	36603065

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9639766	Chr6	1887417	LOC_Os06g04399
Translocation	Chr11	17698153	Chr5	22429614
Translocation	Chr5	17992514	Chr1	36603071
Translocation	Chr5	18007202	Chr1	36312470

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