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Mutant Information

Mutant Name	FN714-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN714-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12275472	A-C	HET	INTERGENIC
SBS	Chr1	16548889	C-T	HET	INTERGENIC
SBS	Chr1	18493893	G-A	HET	INTERGENIC
SBS	Chr1	18990612	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34440
SBS	Chr1	28353565	C-T	HET	INTERGENIC
SBS	Chr2	3962439	G-A	HOMO	INTERGENIC
SBS	Chr2	34921761	T-C	HOMO	INTERGENIC
SBS	Chr2	34921762	A-T	HOMO	INTERGENIC
SBS	Chr2	34921763	C-T	HOMO	INTERGENIC
SBS	Chr3	6282586	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	10205474	T-A	HET	INTRON
SBS	Chr3	11171665	T-C	HET	UTR_5_PRIME
SBS	Chr3	13559330	C-T	HET	INTERGENIC
SBS	Chr3	19650989	G-C	HET	INTERGENIC
SBS	Chr3	27135667	G-A	HET	INTRON
SBS	Chr4	3002231	G-C	HET	INTRON
SBS	Chr4	10929263	T-A	HET	INTRON
SBS	Chr4	17052098	G-C	HET	SPLICE_SITE_REGION
SBS	Chr4	25228149	G-A	HET	INTRON
SBS	Chr4	29110317	G-A	HOMO	UTR_5_PRIME
SBS	Chr5	1554956	T-G	HOMO	INTRON
SBS	Chr5	3402769	T-C	HET	INTERGENIC
SBS	Chr6	812527	A-G	HET	INTRON
SBS	Chr6	19460993	G-A	HET	INTERGENIC
SBS	Chr7	19501180	C-T	HOMO	INTRON
SBS	Chr7	20923497	C-T	HOMO	INTERGENIC
SBS	Chr7	25715324	G-A	HOMO	INTERGENIC
SBS	Chr7	25715325	A-T	HOMO	INTERGENIC
SBS	Chr9	8808696	G-A	HET	INTERGENIC
SBS	Chr9	9232782	G-A	HET	INTERGENIC
SBS	Chr10	473256	T-A	HET	INTERGENIC
SBS	Chr10	11895728	A-C	HET	INTRON
SBS	Chr11	6427084	A-G	HET	INTERGENIC
SBS	Chr11	23776983	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g39890
SBS	Chr12	10345270	G-A	HET	INTERGENIC
SBS	Chr12	25018053	G-T	HOMO	INTRON

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	920051	920052	1
Deletion	Chr12	1505851	1505853	2
Deletion	Chr3	4844252	4844253	1	LOC_Os03g09270
Deletion	Chr9	8276605	8276611	6
Deletion	Chr10	9968930	9968932	2
Deletion	Chr1	10300321	10300338	17
Deletion	Chr6	10587535	10587547	12
Deletion	Chr11	10680843	10680844	1	LOC_Os11g18820
Deletion	Chr4	13472673	13472692	19
Deletion	Chr8	14307866	14307867	1
Deletion	Chr8	15005153	15005183	30
Deletion	Chr10	15342346	15342354	8	LOC_Os10g29540
Deletion	Chr2	15990106	15990107	1	LOC_Os02g27160
Deletion	Chr12	15998167	15998186	19
Deletion	Chr3	16135271	16135276	5
Deletion	Chr4	21301820	21301829	9
Deletion	Chr6	22274438	22274453	15
Deletion	Chr10	22533696	22533699	3
Deletion	Chr5	22922413	22922780	367
Deletion	Chr12	24047637	24047638	1
Deletion	Chr8	24104527	24104535	8
Deletion	Chr7	24983479	24983499	20
Deletion	Chr12	25817880	25817885	5
Deletion	Chr1	27208429	27208430	1
Deletion	Chr7	29010400	29010410	10
Deletion	Chr1	29302420	29302421	1	LOC_Os01g51000
Deletion	Chr3	29445743	29445757	14
Deletion	Chr3	33732590	33732606	16	LOC_Os03g59240
Deletion	Chr1	34235835	34235848	13

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	27345028	27345029	2
Insertion	Chr1	41514524	41514524	1
Insertion	Chr5	28034317	28034317	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9527578	Chr6	25514505
Translocation	Chr12	19818828	Chr6	14832851	2
Translocation	Chr5	22922414	Chr1	21645754	2
Translocation	Chr5	22922775	Chr1	22260466	LOC_Os05g39090
Translocation	Chr7	26294740	Chr2	19408949	2
Translocation	Chr3	32459730	Chr1	35462527

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