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Mutant Information

Mutant Name	FN718-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN718-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34019110	C-T	HET	INTERGENIC
SBS	Chr1	384086	T-A	HET	INTRON
SBS	Chr1	384087	G-T	HET	INTRON
SBS	Chr1	39465053	A-T	HET	INTERGENIC
SBS	Chr1	6964963	C-A	HET	INTERGENIC
SBS	Chr1	6964964	G-A	HET	INTERGENIC
SBS	Chr10	11369718	G-A	HET	INTRON
SBS	Chr10	13071906	A-G	HET	INTERGENIC
SBS	Chr10	17780339	A-C	HET	INTRON
SBS	Chr11	18056681	G-A	HOMO	INTERGENIC
SBS	Chr12	22555269	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36790
SBS	Chr2	17347490	T-A	HOMO	INTERGENIC
SBS	Chr2	17347491	G-T	HOMO	INTERGENIC
SBS	Chr2	24972938	A-T	HOMO	INTERGENIC
SBS	Chr2	3429303	C-T	HOMO	INTRON
SBS	Chr3	1080996	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	12786431	C-T	HOMO	INTERGENIC
SBS	Chr3	28406547	A-G	HET	INTERGENIC
SBS	Chr3	30722267	C-A	HET	INTERGENIC
SBS	Chr4	22509716	C-T	HET	INTERGENIC
SBS	Chr4	26334631	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g44490
SBS	Chr5	14169283	A-G	HET	INTERGENIC
SBS	Chr5	15296715	G-A	HET	INTERGENIC
SBS	Chr5	8211840	T-A	HET	INTRON
SBS	Chr6	11398885	T-C	HET	INTERGENIC
SBS	Chr6	25596569	T-A	HET	INTERGENIC
SBS	Chr7	20842447	G-A	HET	INTERGENIC
SBS	Chr7	9177270	A-T	HET	INTERGENIC
SBS	Chr8	21750557	C-T	HET	INTERGENIC
SBS	Chr8	24149962	G-A	HET	INTERGENIC
SBS	Chr8	6487435	C-T	HET	INTERGENIC
SBS	Chr9	17489993	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	22823835	G-T	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1980122	1980127	5	LOC_Os07g04480
Deletion	Chr7	2656825	2656826	1
Deletion	Chr7	3813877	3813880	3
Deletion	Chr7	5526395	5526403	8	LOC_Os07g10300
Deletion	Chr1	5605079	5605082	3
Deletion	Chr9	7314134	7314136	2
Deletion	Chr1	7349248	7349273	25
Deletion	Chr9	8612897	8612900	3
Deletion	Chr8	9739000	9739019	19
Deletion	Chr8	11307430	11307501	71	LOC_Os08g18960
Deletion	Chr10	11530739	11530745	6
Deletion	Chr10	12349267	12349275	8
Deletion	Chr6	12707872	12716734	8862	LOC_Os06g21980
Deletion	Chr1	15089951	15089953	2
Deletion	Chr7	15271656	15271658	2
Deletion	Chr2	17412353	17426123	13770	3
Deletion	Chr7	17825918	17825925	7
Deletion	Chr10	18100500	18153470	52970	7
Deletion	Chr2	19937508	19937515	7
Deletion	Chr4	20281994	20282003	9
Deletion	Chr4	20898537	20898544	7
Deletion	Chr2	22459062	22459063	1
Deletion	Chr5	23816534	23816539	5
Deletion	Chr8	24273001	24273015	14
Deletion	Chr11	29004999	29005000	1
Deletion	Chr2	29598703	29598712	9	LOC_Os02g48340
Deletion	Chr3	29903593	29903616	23
Deletion	Chr4	32600754	32600755	1	LOC_Os04g54820
Deletion	Chr4	33343086	33345504	2418	LOC_Os04g55970

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	27553767	27553767	1
Insertion	Chr6	700093	700094	2
Insertion	Chr8	143515	143516	2
Insertion	Chr9	15014805	15014808	4

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	661409	2180889	2
Inversion	Chr6	661420	2180892	2
Inversion	Chr1	6809694	7469284
Inversion	Chr1	6809716	7469311
Inversion	Chr4	22215103	33345506	LOC_Os04g55970
Inversion	Chr1	35315022	36084814	2
Inversion	Chr1	35315033	36084814	2
Inversion	Chr1	35562011	43023926
Inversion	Chr1	42381106	43023914	LOC_Os01g73040

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7641698	Chr1	26359238
Translocation	Chr10	11338826	Chr6	10850161	2

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