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Mutant Information

Mutant Name	FN721-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN721-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28124056	G-A	HOMO	INTERGENIC
SBS	Chr1	36998435	C-G	HET	UTR_5_PRIME
SBS	Chr1	38113609	T-C	HET	INTRON
SBS	Chr2	26492785	T-A	HET	INTERGENIC
SBS	Chr2	33106164	T-C	HET	INTERGENIC
SBS	Chr2	35652536	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g58240
SBS	Chr3	6403120	A-G	HET	INTERGENIC
SBS	Chr3	19422710	A-T	HET	INTRON
SBS	Chr3	20614582	A-T	HET	INTERGENIC
SBS	Chr4	3054497	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05900
SBS	Chr4	9049427	G-A	HET	INTERGENIC
SBS	Chr4	12624542	G-A	HET	INTERGENIC
SBS	Chr4	16865661	C-T	HET	INTRON
SBS	Chr4	18321780	C-T	HET	STOP_GAINED	LOC_Os04g30660
SBS	Chr4	19950274	G-T	HET	INTERGENIC
SBS	Chr4	21075868	C-T	HET	INTERGENIC
SBS	Chr4	27899121	C-A	HOMO	INTERGENIC
SBS	Chr4	30733665	T-C	HOMO	INTERGENIC
SBS	Chr5	16181265	G-A	HOMO	INTERGENIC
SBS	Chr5	17346573	C-G	HOMO	INTRON
SBS	Chr5	28432129	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	27351194	C-A	HOMO	INTERGENIC
SBS	Chr7	6894587	C-T	HOMO	INTERGENIC
SBS	Chr7	23330638	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38910
SBS	Chr8	9905920	T-A	HET	INTERGENIC
SBS	Chr8	11296136	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18940
SBS	Chr8	21917920	T-C	HET	INTERGENIC
SBS	Chr8	25997711	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g41150
SBS	Chr10	131611	C-T	HOMO	INTERGENIC
SBS	Chr10	7237366	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13400
SBS	Chr10	12206886	T-C	HOMO	INTERGENIC
SBS	Chr10	13563435	T-A	HET	INTRON
SBS	Chr10	16406196	C-A	HOMO	INTERGENIC
SBS	Chr11	11850067	C-T	HOMO	INTERGENIC
SBS	Chr11	17724302	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	26496934	C-T	HET	INTERGENIC
SBS	Chr12	27191178	T-C	HOMO	UTR_3_PRIME

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1118471	1118472	1
Deletion	Chr8	2418359	2418360	1
Deletion	Chr8	3240255	3240256	1
Deletion	Chr10	4893598	4893624	26
Deletion	Chr6	7395127	7395139	12
Deletion	Chr5	8564567	8564568	1
Deletion	Chr3	9111859	9111865	6	LOC_Os03g16530
Deletion	Chr5	11251837	11251846	9
Deletion	Chr3	16306326	16306350	24	LOC_Os03g28330
Deletion	Chr12	16351613	16351618	5
Deletion	Chr10	17406837	17406846	9
Deletion	Chr5	17946229	17946230	1
Deletion	Chr7	19870001	19887000	17000	2
Deletion	Chr9	21374631	21374635	4
Deletion	Chr1	22342588	22342592	4
Deletion	Chr1	25825429	25825442	13
Deletion	Chr2	26726313	26726320	7
Deletion	Chr6	27472086	27472087	1
Deletion	Chr5	28752179	28752182	3
Deletion	Chr2	32274112	32274123	11	LOC_Os02g52770

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35770112	35770113	2
Insertion	Chr4	13912052	13912054	3
Insertion	Chr11	22227402	22227404	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	20234435	20617850
Inversion	Chr3	20234703	20617852

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	8086134	Chr5	11371663
Translocation	Chr12	12183134	Chr6	22177386
Translocation	Chr12	14401104	Chr7	16636629

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